Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2514 |
Symbol | |
ID | 6161467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2742085 |
End bp | 2745597 |
Gene Length | 3513 bp |
Protein Length | 1170 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665284 |
Product | chromosome segregation protein SMC |
Protein accession | YP_001791544 |
Protein GI | 171059195 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning |
COG ID | [COG1196] Chromosome segregation ATPases |
TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0530303 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACTGA ATTCGATCAA GCTTTCCGGC TTCAAGTCCT TTGCCGAGCC CACCCATTTC CAGCTGCCCG GCCAACTGGT CGGCGTGGTC GGCCCGAACG GCTGCGGCAA GTCCAACATC ATGGACGCGG TGCGCTGGGT GCTGGGCGAG AGCAAGGCCA GCGAGCTGCG CGGCGAGTCG ATGCAGGACG TCATCTTCAA CGGCAGCGGC AACCGCAAGC CGGCCAGCCG TGCCAGCGTC GAGCTGATCT TCGACAACGC CAGCGCGCGC GCCGGCGGCC AGTGGAACCA GTTCACCGAG ATCGCCGTCA AGCGCGTGCT CACCCGCGAC GGCACCAGCA GCTACTACAT CAACAACCAG CCGGTGCGCC GGCGCGACGT GCAGGACGTC TTCCTCGGCA CCGGCCTGGG GCCGCGCGCC TACGCCATCA TCGGCCAGGG CACCATCAGC CGCATCATCG AATCGCGCCC CGAGGAGCTG CGGCTGTTCC TCGAAGAGGC CGCCGGTGTC TCCAAGTACA AGGAGCGTCG CCGCGAGACC GAGAACCGCC TGAAGGACAC GCGCGAGAAC CTGACCCGCG TCGACGACAT CCTGCGCGAG CTCAACAGCA ACCTCGAGCG CCTGGAGGCG CAGGCCGCGG TGGCGCAGCG TTACCGCGGA CTGCAGGACG CCGGCACGCT CAAGCTGCAC CAGCTCTGGT TCCTGAAACA CCGCGACGCC ACCTCCGAGC AGGACCGCGT GCGCGAGGCG GTGCTGACCG CCACCAACGC GCTCGAATCG CGCCTGGCCG AGCTGCGCCA CGTCGAGGCC GAGCTGGAGG AAGTGCGCCA GCAGCATTTC GGCGCCAACG ACGAGCTGCA CGCCGCCCAG GGCGCGCTGG CCGAGGTGTC GATGGAGGTG AGCCGGCTCG AGGAGCGCAT CCGCCATGTC GTCGAAGGCC GTGCCCGCGC GCAGCAGCGC CTGGCCGACA GCCAGGCCCA GAACGCGCAG TGGACGCAGC GCCGCGAGCA GGCCGAGACC GAGCTGGAGA CGCTGGCCGA CCAGATCGCC GCCGCCGAGG AGCAGGGCGA GGTGCTCGCC GCCCAGGCCG AAGACCAGGC GATGGCCTTG CCCGGTTTCG AGGACGCCGT GCGCGCCGCC ACGAACACCG CCAACCAGCA GCGCGCCCGC GCCGCCGAGG TGCAGCAGCA GATCCAGCTG CTGGCCGCGC AGTCGCGCAA CCTCGACGAG CGCCGGCGCG AGCTCAACCA GCGCCGCGAC CGCCTGGCCG GCGAGCGCCG CGGTCTGGTC GCGCCCGATC TCGATCACCT GGCCGGCTTG CGCGCCCAGC TCGAACAGGC GCAGGAACAG CAGGCGCTGG CCGACGAGCA GCTGCAGGAG CTGGCCGCCG AAGTGCCCAC GCTCGACGAG CAGCGCCGCC ACCAGCAGAA CCTCGTCAAC AGCGAATCGG CGCGCGCGGC TGCGGTCAAG GCCCGGCTCG AGGCGCTGCG GGCGCTGCAG GAGAAGGTGC AGACCGAAGG CAAGCTCAAG CCCTGGCTGG CCAAGCACGG CCTCGACGGC CTGGCCGGTC TGTGGACGCG CATCCACATC GAGACCGGCT GGGAGACCGC GCTCGAGGCG GTGCTGCGCG AGCGCATCGG CGCGCTTGCC GTCGGCCGCA TCGAGACCGT GCGGGCTTTC GAGCTCGATC CGCCGCCGGC CAAGCTGGCC TTCTACACGG CGCCGCTGTC GGCCATCGCC AACAGCCACC AGACGCTGCC GCGGCTGTCG GACCTGCTGC GCCTGGCCGA CCCGGGCCTG AAGGCGCTGC TCAACGACTG GCTCGAAGGT GTCTACACCG CCGCCAGCCT GGACGAGGCG CTCGCCAATC GCCAGCGCCT GACGCACGGC GAAGTGATCA TGACCGCCGC GGGCCACGCG GTGAGCCAGT TCGCGGTGAG CTTTTACGCC CCCGACGCCG AGCAGGCCGG CATGCTGGCG CGCGCCCAGG AGATCGAGAA CCTCGAGCTC GAAGGTCGCG CCCAGGCGCT GCTGTCCGAC GAGGCGCGCA GCGCGCTGGT GCGCGCCGAA GCCCAGTACA CCGACGCCGC GATGCGCCTG GCGCGCGTGC GACGCGAGGC GCAGGAGGCT CAGACCCGCG CGCACCAGCT GCAGGTCGAC GTGCTGCGCC TGGCCCAGCA GGCCGAGCAG GCGACCCAGC GGCGCGACCA GCTCGACGCC GAGCTGCACG AGATCGACGC CAACCTCGAA GAAAACGAGG AGCGCCGCAT GACCGGCGAG GCGCGTTTCG AGGAGCTCGA CATCGCGCTG GGCACCGAAC AGGAGCGCCA CGCCGAGCTG GAAGAAGCGG TGATCGCCGC CGATCGCCGC CTGTCCGACG CCCGCGAGAA GCTGCGCAGC CTGGAGCGCG CGGCGCAGGA GGCGCAGTTC TCGGCCCGCG CGCTGGCGGC GCGGCGCGGC GAGCTGCAGC GCAGCATCGA GACCGCGGTG GCGCAGCAGC ACGCCAACGC GCACGCCGCC GCGCAGATCG AGGACGAACT CGCCCGCTTC GACGACGCCG CGGCCGAGGG CGGCCTGCAG GAGGCGCTGG CGCTGCGGCT CGAACGCGAG CAGGTGCTGG GCGCTGCGCG CAGCCGCTAC GACGACCTGT CGGCGCAACT GCGTCGCGCC GACGAGCAGC GCCTGGCCTT CGAGCGCAGC CTGCAGCCGC TGCGCGACGA GATCACCCGC CTGCAGCTCG AAGAGCAGGC CGCGCACCTG GGCGGCGCGC AGTTCATGGA GCAGCTGCAG GCCGCCGAGG TCGACCTGGC GATGCTCGCC GCCGGCATCG AGGCCGACGC CGTCAAGCTC TACGGCCTGC AGACCGAGAT CGACCGCATC AACCGCGAGA TCGCCGCGCT CGGCGCCGTC AACCTGGCCG CGCTCGACGA GCTGAAGGCG GCGAGCGAGC GCAAGGGTTT TCTCGACGCC CAGAACGACG ACCTGACGCG CGCGATGAAC ACGCTCGAGG ACGCGATCCG CAAGATCGAC ATCGAGACCC GCGACCTGCT CAAGGGCACC TTCGACCAGG TCAACGAAGG TTTCGGCCAG ATGTTCCCGA GCCTGTTCGG CGGTGGCCAG GCCCGGCTGG TGATGACCGG CGACGAGATC CTGGATGCCG GCGTGCAGGT GATGGCGCAG CCGCCGGGCA AGAAGAACAG CACCATCCAC CTGCTGTCGG GTGGCGAGAA GGCGCTGACC GCGATCGCGC TGGTGTTCGC GATCTTCCTG CTCAACCCGG CGCCGTTCTG CCTGCTCGAT GAAGTGGACG CGCCGCTGGA CGACGCCAAC ACCGAGCGCT ACGCCAAGCT GGTCGAGAAG ATGTCCGCCG GCACGCAGTT CCTGTTCATC TCGCACAACA AGATCGCGAT GGAAATGGCC CAGCAGCTGA TCGGCGTGAC GATGCAGGAA CAGGGCGTGT CGCGCATCGT GGCGGTCGAC ATGGACTCGG CGCTGTCGAT GGCTGAGGCA TGA
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Protein sequence | MRLNSIKLSG FKSFAEPTHF QLPGQLVGVV GPNGCGKSNI MDAVRWVLGE SKASELRGES MQDVIFNGSG NRKPASRASV ELIFDNASAR AGGQWNQFTE IAVKRVLTRD GTSSYYINNQ PVRRRDVQDV FLGTGLGPRA YAIIGQGTIS RIIESRPEEL RLFLEEAAGV SKYKERRRET ENRLKDTREN LTRVDDILRE LNSNLERLEA QAAVAQRYRG LQDAGTLKLH QLWFLKHRDA TSEQDRVREA VLTATNALES RLAELRHVEA ELEEVRQQHF GANDELHAAQ GALAEVSMEV SRLEERIRHV VEGRARAQQR LADSQAQNAQ WTQRREQAET ELETLADQIA AAEEQGEVLA AQAEDQAMAL PGFEDAVRAA TNTANQQRAR AAEVQQQIQL LAAQSRNLDE RRRELNQRRD RLAGERRGLV APDLDHLAGL RAQLEQAQEQ QALADEQLQE LAAEVPTLDE QRRHQQNLVN SESARAAAVK ARLEALRALQ EKVQTEGKLK PWLAKHGLDG LAGLWTRIHI ETGWETALEA VLRERIGALA VGRIETVRAF ELDPPPAKLA FYTAPLSAIA NSHQTLPRLS DLLRLADPGL KALLNDWLEG VYTAASLDEA LANRQRLTHG EVIMTAAGHA VSQFAVSFYA PDAEQAGMLA RAQEIENLEL EGRAQALLSD EARSALVRAE AQYTDAAMRL ARVRREAQEA QTRAHQLQVD VLRLAQQAEQ ATQRRDQLDA ELHEIDANLE ENEERRMTGE ARFEELDIAL GTEQERHAEL EEAVIAADRR LSDAREKLRS LERAAQEAQF SARALAARRG ELQRSIETAV AQQHANAHAA AQIEDELARF DDAAAEGGLQ EALALRLERE QVLGAARSRY DDLSAQLRRA DEQRLAFERS LQPLRDEITR LQLEEQAAHL GGAQFMEQLQ AAEVDLAMLA AGIEADAVKL YGLQTEIDRI NREIAALGAV NLAALDELKA ASERKGFLDA QNDDLTRAMN TLEDAIRKID IETRDLLKGT FDQVNEGFGQ MFPSLFGGGQ ARLVMTGDEI LDAGVQVMAQ PPGKKNSTIH LLSGGEKALT AIALVFAIFL LNPAPFCLLD EVDAPLDDAN TERYAKLVEK MSAGTQFLFI SHNKIAMEMA QQLIGVTMQE QGVSRIVAVD MDSALSMAEA
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