Gene Lcho_2514 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2514 
Symbol 
ID6161467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2742085 
End bp2745597 
Gene Length3513 bp 
Protein Length1170 aa 
Translation table11 
GC content71% 
IMG OID641665284 
Productchromosome segregation protein SMC 
Protein accessionYP_001791544 
Protein GI171059195 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR02168] chromosome segregation protein SMC, common bacterial type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0530303 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACTGA ATTCGATCAA GCTTTCCGGC TTCAAGTCCT TTGCCGAGCC CACCCATTTC 
CAGCTGCCCG GCCAACTGGT CGGCGTGGTC GGCCCGAACG GCTGCGGCAA GTCCAACATC
ATGGACGCGG TGCGCTGGGT GCTGGGCGAG AGCAAGGCCA GCGAGCTGCG CGGCGAGTCG
ATGCAGGACG TCATCTTCAA CGGCAGCGGC AACCGCAAGC CGGCCAGCCG TGCCAGCGTC
GAGCTGATCT TCGACAACGC CAGCGCGCGC GCCGGCGGCC AGTGGAACCA GTTCACCGAG
ATCGCCGTCA AGCGCGTGCT CACCCGCGAC GGCACCAGCA GCTACTACAT CAACAACCAG
CCGGTGCGCC GGCGCGACGT GCAGGACGTC TTCCTCGGCA CCGGCCTGGG GCCGCGCGCC
TACGCCATCA TCGGCCAGGG CACCATCAGC CGCATCATCG AATCGCGCCC CGAGGAGCTG
CGGCTGTTCC TCGAAGAGGC CGCCGGTGTC TCCAAGTACA AGGAGCGTCG CCGCGAGACC
GAGAACCGCC TGAAGGACAC GCGCGAGAAC CTGACCCGCG TCGACGACAT CCTGCGCGAG
CTCAACAGCA ACCTCGAGCG CCTGGAGGCG CAGGCCGCGG TGGCGCAGCG TTACCGCGGA
CTGCAGGACG CCGGCACGCT CAAGCTGCAC CAGCTCTGGT TCCTGAAACA CCGCGACGCC
ACCTCCGAGC AGGACCGCGT GCGCGAGGCG GTGCTGACCG CCACCAACGC GCTCGAATCG
CGCCTGGCCG AGCTGCGCCA CGTCGAGGCC GAGCTGGAGG AAGTGCGCCA GCAGCATTTC
GGCGCCAACG ACGAGCTGCA CGCCGCCCAG GGCGCGCTGG CCGAGGTGTC GATGGAGGTG
AGCCGGCTCG AGGAGCGCAT CCGCCATGTC GTCGAAGGCC GTGCCCGCGC GCAGCAGCGC
CTGGCCGACA GCCAGGCCCA GAACGCGCAG TGGACGCAGC GCCGCGAGCA GGCCGAGACC
GAGCTGGAGA CGCTGGCCGA CCAGATCGCC GCCGCCGAGG AGCAGGGCGA GGTGCTCGCC
GCCCAGGCCG AAGACCAGGC GATGGCCTTG CCCGGTTTCG AGGACGCCGT GCGCGCCGCC
ACGAACACCG CCAACCAGCA GCGCGCCCGC GCCGCCGAGG TGCAGCAGCA GATCCAGCTG
CTGGCCGCGC AGTCGCGCAA CCTCGACGAG CGCCGGCGCG AGCTCAACCA GCGCCGCGAC
CGCCTGGCCG GCGAGCGCCG CGGTCTGGTC GCGCCCGATC TCGATCACCT GGCCGGCTTG
CGCGCCCAGC TCGAACAGGC GCAGGAACAG CAGGCGCTGG CCGACGAGCA GCTGCAGGAG
CTGGCCGCCG AAGTGCCCAC GCTCGACGAG CAGCGCCGCC ACCAGCAGAA CCTCGTCAAC
AGCGAATCGG CGCGCGCGGC TGCGGTCAAG GCCCGGCTCG AGGCGCTGCG GGCGCTGCAG
GAGAAGGTGC AGACCGAAGG CAAGCTCAAG CCCTGGCTGG CCAAGCACGG CCTCGACGGC
CTGGCCGGTC TGTGGACGCG CATCCACATC GAGACCGGCT GGGAGACCGC GCTCGAGGCG
GTGCTGCGCG AGCGCATCGG CGCGCTTGCC GTCGGCCGCA TCGAGACCGT GCGGGCTTTC
GAGCTCGATC CGCCGCCGGC CAAGCTGGCC TTCTACACGG CGCCGCTGTC GGCCATCGCC
AACAGCCACC AGACGCTGCC GCGGCTGTCG GACCTGCTGC GCCTGGCCGA CCCGGGCCTG
AAGGCGCTGC TCAACGACTG GCTCGAAGGT GTCTACACCG CCGCCAGCCT GGACGAGGCG
CTCGCCAATC GCCAGCGCCT GACGCACGGC GAAGTGATCA TGACCGCCGC GGGCCACGCG
GTGAGCCAGT TCGCGGTGAG CTTTTACGCC CCCGACGCCG AGCAGGCCGG CATGCTGGCG
CGCGCCCAGG AGATCGAGAA CCTCGAGCTC GAAGGTCGCG CCCAGGCGCT GCTGTCCGAC
GAGGCGCGCA GCGCGCTGGT GCGCGCCGAA GCCCAGTACA CCGACGCCGC GATGCGCCTG
GCGCGCGTGC GACGCGAGGC GCAGGAGGCT CAGACCCGCG CGCACCAGCT GCAGGTCGAC
GTGCTGCGCC TGGCCCAGCA GGCCGAGCAG GCGACCCAGC GGCGCGACCA GCTCGACGCC
GAGCTGCACG AGATCGACGC CAACCTCGAA GAAAACGAGG AGCGCCGCAT GACCGGCGAG
GCGCGTTTCG AGGAGCTCGA CATCGCGCTG GGCACCGAAC AGGAGCGCCA CGCCGAGCTG
GAAGAAGCGG TGATCGCCGC CGATCGCCGC CTGTCCGACG CCCGCGAGAA GCTGCGCAGC
CTGGAGCGCG CGGCGCAGGA GGCGCAGTTC TCGGCCCGCG CGCTGGCGGC GCGGCGCGGC
GAGCTGCAGC GCAGCATCGA GACCGCGGTG GCGCAGCAGC ACGCCAACGC GCACGCCGCC
GCGCAGATCG AGGACGAACT CGCCCGCTTC GACGACGCCG CGGCCGAGGG CGGCCTGCAG
GAGGCGCTGG CGCTGCGGCT CGAACGCGAG CAGGTGCTGG GCGCTGCGCG CAGCCGCTAC
GACGACCTGT CGGCGCAACT GCGTCGCGCC GACGAGCAGC GCCTGGCCTT CGAGCGCAGC
CTGCAGCCGC TGCGCGACGA GATCACCCGC CTGCAGCTCG AAGAGCAGGC CGCGCACCTG
GGCGGCGCGC AGTTCATGGA GCAGCTGCAG GCCGCCGAGG TCGACCTGGC GATGCTCGCC
GCCGGCATCG AGGCCGACGC CGTCAAGCTC TACGGCCTGC AGACCGAGAT CGACCGCATC
AACCGCGAGA TCGCCGCGCT CGGCGCCGTC AACCTGGCCG CGCTCGACGA GCTGAAGGCG
GCGAGCGAGC GCAAGGGTTT TCTCGACGCC CAGAACGACG ACCTGACGCG CGCGATGAAC
ACGCTCGAGG ACGCGATCCG CAAGATCGAC ATCGAGACCC GCGACCTGCT CAAGGGCACC
TTCGACCAGG TCAACGAAGG TTTCGGCCAG ATGTTCCCGA GCCTGTTCGG CGGTGGCCAG
GCCCGGCTGG TGATGACCGG CGACGAGATC CTGGATGCCG GCGTGCAGGT GATGGCGCAG
CCGCCGGGCA AGAAGAACAG CACCATCCAC CTGCTGTCGG GTGGCGAGAA GGCGCTGACC
GCGATCGCGC TGGTGTTCGC GATCTTCCTG CTCAACCCGG CGCCGTTCTG CCTGCTCGAT
GAAGTGGACG CGCCGCTGGA CGACGCCAAC ACCGAGCGCT ACGCCAAGCT GGTCGAGAAG
ATGTCCGCCG GCACGCAGTT CCTGTTCATC TCGCACAACA AGATCGCGAT GGAAATGGCC
CAGCAGCTGA TCGGCGTGAC GATGCAGGAA CAGGGCGTGT CGCGCATCGT GGCGGTCGAC
ATGGACTCGG CGCTGTCGAT GGCTGAGGCA TGA
 
Protein sequence
MRLNSIKLSG FKSFAEPTHF QLPGQLVGVV GPNGCGKSNI MDAVRWVLGE SKASELRGES 
MQDVIFNGSG NRKPASRASV ELIFDNASAR AGGQWNQFTE IAVKRVLTRD GTSSYYINNQ
PVRRRDVQDV FLGTGLGPRA YAIIGQGTIS RIIESRPEEL RLFLEEAAGV SKYKERRRET
ENRLKDTREN LTRVDDILRE LNSNLERLEA QAAVAQRYRG LQDAGTLKLH QLWFLKHRDA
TSEQDRVREA VLTATNALES RLAELRHVEA ELEEVRQQHF GANDELHAAQ GALAEVSMEV
SRLEERIRHV VEGRARAQQR LADSQAQNAQ WTQRREQAET ELETLADQIA AAEEQGEVLA
AQAEDQAMAL PGFEDAVRAA TNTANQQRAR AAEVQQQIQL LAAQSRNLDE RRRELNQRRD
RLAGERRGLV APDLDHLAGL RAQLEQAQEQ QALADEQLQE LAAEVPTLDE QRRHQQNLVN
SESARAAAVK ARLEALRALQ EKVQTEGKLK PWLAKHGLDG LAGLWTRIHI ETGWETALEA
VLRERIGALA VGRIETVRAF ELDPPPAKLA FYTAPLSAIA NSHQTLPRLS DLLRLADPGL
KALLNDWLEG VYTAASLDEA LANRQRLTHG EVIMTAAGHA VSQFAVSFYA PDAEQAGMLA
RAQEIENLEL EGRAQALLSD EARSALVRAE AQYTDAAMRL ARVRREAQEA QTRAHQLQVD
VLRLAQQAEQ ATQRRDQLDA ELHEIDANLE ENEERRMTGE ARFEELDIAL GTEQERHAEL
EEAVIAADRR LSDAREKLRS LERAAQEAQF SARALAARRG ELQRSIETAV AQQHANAHAA
AQIEDELARF DDAAAEGGLQ EALALRLERE QVLGAARSRY DDLSAQLRRA DEQRLAFERS
LQPLRDEITR LQLEEQAAHL GGAQFMEQLQ AAEVDLAMLA AGIEADAVKL YGLQTEIDRI
NREIAALGAV NLAALDELKA ASERKGFLDA QNDDLTRAMN TLEDAIRKID IETRDLLKGT
FDQVNEGFGQ MFPSLFGGGQ ARLVMTGDEI LDAGVQVMAQ PPGKKNSTIH LLSGGEKALT
AIALVFAIFL LNPAPFCLLD EVDAPLDDAN TERYAKLVEK MSAGTQFLFI SHNKIAMEMA
QQLIGVTMQE QGVSRIVAVD MDSALSMAEA