| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2505 |
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| Symbol | |
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| ID | 6162513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2730335 |
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| End bp | 2732641 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665275 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001791535 |
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| Protein GI | 171059186 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000421321 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGCCTT CAGCTCCTGC CAACTCCGCT CCCGACCCTG ATCGCAACGG TGTTCCTGAC
GTCGGCCCGG CCAGCGCGGC GCCACCCGAT CTGCAGACCG CCGCCGCACG CGCGGCCTGG
CTGCGCAGCA CGCTGCAGCA CCACGCGCAC CTCTATTACG TGCTCGACGC GCCCGAGTTG
CCCGATGCCG AGTACGACCG CCTGTTTCAA GAGTTGCAGG CCATCGAGGC GATGTATCCG
GCGCTGCGTA CCGCCGATTC ACCCACGCAG CGTGTGCTCG GCCAGGTCCG CGACGGCTTC
GTCGTGGTGC GCCACGCCGT GCCGATGCTC AGCATCCGCA CCGAGACCGA CACCGAGGCC
AGCGGCGCGG TCGCTTTTGA TGCGCGGGTG CGCCGCGAGC TGGAACTGCC CGACGACGCC
CCGCCGATCA GCTACGCCAC CGAGCTCAAG TTCGACGGCC TGGCGATCAA CCTGCGTTAC
GAACACGGCG TGCTGGTGCA GGCTGCCACC CGCGGCGACG GCGAAAGCGG CGAGGACGTG
ACGCAGAACA TCCGCACCAT CGGCCAGATC CCGCTGCGGC TGAGGTGGGC CCCCACGCTC
GGCGCTGATG CGCACTCGCT GCCCCCCGAG GGGGCGCGTT TCGCCTTGGG GCGGCCCGGC
GGCGAAACCG GTGCGCCGGA TCTGGCCCCT GCCGTTCTGG AGGTGCGCGG CGAGGTCTAC
ATGCGCCGCG ACGATTTCGA GGCGCTCAAC GAGCGCCAGC GCGAGCGCAT CGCGCGCGGC
GACAAGGGCG AGAAGACCTT CGTCAACCCG CGCAATGCTG CAGCCGGCGC GGTGCGCCAG
CTTGACCCGG CGATCGCGGC GCAGCGGCCG CTGAGCTTCT TCGCCTACGG CCTGGGCGAG
GTGCAGGGCT GGGCGCTGCC ACACACCCAC GCCGGCCTGC TCGACGCGCT GGCCGCCGCC
GGCCTGCCGG TGTGCGCCGA GCGCGCGGTG GTGCAGGGCG CCGACGGGCT GGTGGCGTTC
CACCAGCGCA TCGGCGCGCT GCGCGACAGC CTGGCGTTCG ACATCGACGG CGTGGTCTAC
AAGGTCGACA GCCTGGCGCT GCAGCAGCGG CTCGGTTTCG TGACCCGCGA GCCGCGCTGG
GCGGTGGCGC ACAAATACCC GGCGCAGGAG CAGATGACGC GGCTGCTGGG CATCGAGATC
CAGGTCGGGC GCACCGGCAA GCTCACGCCG GTGGCCCGGC TGGAGCCGGT GTTCGTCGGC
GGCACGACGG TCAGCAACGC CACGCTGCAC AACGAGGACG AAGCGCGCCG CAAGGACGTG
CGCGTGGGCG ACACCGTGAT CGTGCGGCGT GCCGGTGACG TCATCCCCCA GGTGGTCGGC
GTGGTGCTGG AGCAGCGCCC GGATGACGTC GGCGAACCGT TCGACCTCTA CCAGCGCCTG
GGCGGCCGGT GCCCGGTGTG CGGCAGCGCG ATCGCACGGC CCGAAGGCGA GGCCGACTGG
CGCTGCACCG GCGGCCTGTT CTGCGCCGCG CAGCGCAAGC AGGCGATCCT GCATTTCGCC
AGCCGGCGCA TGATGGACAT CGAGGGTCTG GGTGACAAGC TGGTCGATCA GCTGGTCGAC
GCCGGCGTCA TCCGCACCCT GCCCGAGCTC TACAAGCTCG GCGTGGCCAA GCTGACCGCG
CTGGAGCGCA TGGGCGAGAA GAGCGCCGTC AACCTGGTGG CCGCGCTCGA GAAGAGCAAG
CAGACGACGC TGGCGCGCTT CCTGTTTTCG CTCGGCATCC GCCAGGTCGG CGAGGCCACG
GCCAAGGCGC TGGCGCGGCA TTTCGGCGCG CTCGACCGGG TGATGGACGC CAGCGTCGAT
CAGCTGCAGG CGGTGCCCGA TGTCGGCCCG ATCGTGGCGC TGAGCATCCG CACCTTCTTC
GACCAGCCGC ACAACCGCGA GGTGGTCGAG CAGCTGCGCG CGGCCGGCAT CCACTGGGCC
GAACACGAGG CCAGCGCCGC CGCCGACGCC GCCGAACTGC CGCTGGCCGG CAAGACGCTG
GTGCTGACCG GCACGCTGCC CACGCTCGGC CGCGACGCCG CCAAGGACCT GATCGAAGCC
GCGGGCGGCA AGGTGAGCGG CTCGGTGTCG AAGAAGACCC ACTTCGTGGT GGCCGGCGCG
GAGGCCGGCA GCAAGCTCGA CAAGGCGCGC GAGCTGGGGC TGGTGATCCT CGACGAGGCC
GGCCTGCTGG CCTTGCTGAA CGAGGCCGAG GCCGACGCCG ATGCCGATGC CGAGGGTTTG
CCTGACTCGC CTGTTGCGCC AACGTAA
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| Protein sequence | MSPSAPANSA PDPDRNGVPD VGPASAAPPD LQTAAARAAW LRSTLQHHAH LYYVLDAPEL
PDAEYDRLFQ ELQAIEAMYP ALRTADSPTQ RVLGQVRDGF VVVRHAVPML SIRTETDTEA
SGAVAFDARV RRELELPDDA PPISYATELK FDGLAINLRY EHGVLVQAAT RGDGESGEDV
TQNIRTIGQI PLRLRWAPTL GADAHSLPPE GARFALGRPG GETGAPDLAP AVLEVRGEVY
MRRDDFEALN ERQRERIARG DKGEKTFVNP RNAAAGAVRQ LDPAIAAQRP LSFFAYGLGE
VQGWALPHTH AGLLDALAAA GLPVCAERAV VQGADGLVAF HQRIGALRDS LAFDIDGVVY
KVDSLALQQR LGFVTREPRW AVAHKYPAQE QMTRLLGIEI QVGRTGKLTP VARLEPVFVG
GTTVSNATLH NEDEARRKDV RVGDTVIVRR AGDVIPQVVG VVLEQRPDDV GEPFDLYQRL
GGRCPVCGSA IARPEGEADW RCTGGLFCAA QRKQAILHFA SRRMMDIEGL GDKLVDQLVD
AGVIRTLPEL YKLGVAKLTA LERMGEKSAV NLVAALEKSK QTTLARFLFS LGIRQVGEAT
AKALARHFGA LDRVMDASVD QLQAVPDVGP IVALSIRTFF DQPHNREVVE QLRAAGIHWA
EHEASAAADA AELPLAGKTL VLTGTLPTLG RDAAKDLIEA AGGKVSGSVS KKTHFVVAGA
EAGSKLDKAR ELGLVILDEA GLLALLNEAE ADADADAEGL PDSPVAPT
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