Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2501 |
Symbol | |
ID | 6160680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2722967 |
End bp | 2724790 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641665271 |
Product | SSS family solute/sodium (Na+) symporter |
Protein accession | YP_001791531 |
Protein GI | 171059182 |
COG category | [R] General function prediction only |
COG ID | [COG4147] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0000000632414 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCGGA TTTCTGCAAC TCGCAACGTC ACGGTGGCGC TGATCGCGCT GCTGGCCGGC GCCGCGGCCT GGGCCGCAGG TGCTGACGTC GGCCAGGCCG CCAAGCAGGC GACCAACTGG ACCGCCATCG GCATGTTCGC CGCCTTCGTG GCCGGCACGC TCTACATCAC AAAGTGGGCC GCCGCCAAGA CCAAGTCGGC TGCCGACTTC TACACCGGCG GTGGCGGCAT CACCGGCTTC CAGAACGGCC TGGCGATCGC CGGCGACTAC ATGTCGGCCG CTTCGTTCCT GGGCATCTCG GCAGCCGTGA TGGCTTCCGG CTACGACGGC CTGATCTTCT CGATCGGCTT CCTGGTCGGC TGGCCGGTCA TCACCTTCCT GATGGCCGAG CGCCTGCGCA ACCTCGGCAA GTTCACGTTT GCCGACGTCG CCGGTTACCG CTTCAAGCCG GGCCCGATCC GCGCCTTCGC GGCCTCGGGC ACGCTGGTCG TGGTGGCGTT CTACCTGATC GCGCAGATGG TCGGTGCCGG CCAGCTCATC AAGCTGCTGT TCGGCCTGGA GTACTGGATG GCGGTGGTCA TCGTCGGCGC GCTGATGATG ATCTACGTGC TGTTCGGCGG CATGACGGCC ACCACCTGGG TGCAGATCAT CAAGGCCTGC CTGCTGCTGT CGGGCGTGAC CTTCATGGCC TTCATGGTGA TGTCGCAGTT CGGCTTCTCG CCTGAAGCGC TGTTCGCCCA GGGCGTGGCG GTCAAGTCGG CCATCGCGGT CAATGCCAAG GCAGCAGCCG TTGCCGCTGC CGCGGCCAGT GCGGCCGTGG CGACCACGCC CGAAGCCGTG GCAGCCGCTG CTGCGGCCGT GACCAAGGCC GAAGCCATCG ATCCGGCCAA GGTCGGCCTG GCCCTGATGG GCCCGGGCGG CTTCATCAAG GACCCGATCT CGGCGATCAG CTTCGGCATG GCGCTGATGT TCGGCACCGC CGGCCTGCCG CACATCCTGA TGCGCTTCTT CACGGTGCCT GATGCCAAGG AAGCCCGCAA GTCGGTGTTC TGGGCGACCA CCTGGATCGG CTACTTCTAC ATCCTGATCT TCATCATCGG CTTCGGCGCG ATCACCCTGG TGCTGACCAA CCCCGAGTAC TCGGATGTTG CCAAGGGCGT CATCCTGGGC GGCGCGGGCA CGGCCAACAT GGCGGCGGTG CTGGTGGCCA AGGCGGTCGG CGGCAACGTG TTCTACGGCT TCATCTCGGC GGTGGCCTTC GCGACCATCC TCGCGGTGGT GGCCGGCCTG ACGCTGTCGG GTGCCTCGGC GGTGTCGCAT GACATCTATG CCACGCTGAT CAAGAAGGGC AAGGCAGACA GCGCAGCTGA ACTGAAGGTC TCGCGCATCA CCACCCTGGC GCTCGGCGTC CTGGCGGTCA CGCTGGGCAT CGTGTTCGAG AAGCAGAACA TCGCCTTCAT GGTGTCGCTG GCCTTCGCGA TCGCGGCCTC GGCCAACTTC CCGGTGCTCT TCATGAGCGT GCTGTGGAAG GACTGCACCA CCAAGGGTGC GGTGATCGGC GGCTTCCTGG GCCTGTTCTC GTCGGTCGCG CTGACCATCG TGTCGCCGTC GGTGTGGGAA GCCACGCTCG GCAACCCGAA GGGCTCGGCC TGGTTCCCGT ACAGCTCGCC GGCGCTGTTC TCGATGACGA TCGCCTTCGT CAGCATCTGG CTGATCTCGA TCCTCGACCG CAGCCCGCAG GCGGCCAAGG AACGTGCCCT GTTCGACGCG CAGCAAGTGC GCAGCGAAAC CGGTCTCGGC GCTGCCGGTG CCTCGGGTCA CTGA
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Protein sequence | MKRISATRNV TVALIALLAG AAAWAAGADV GQAAKQATNW TAIGMFAAFV AGTLYITKWA AAKTKSAADF YTGGGGITGF QNGLAIAGDY MSAASFLGIS AAVMASGYDG LIFSIGFLVG WPVITFLMAE RLRNLGKFTF ADVAGYRFKP GPIRAFAASG TLVVVAFYLI AQMVGAGQLI KLLFGLEYWM AVVIVGALMM IYVLFGGMTA TTWVQIIKAC LLLSGVTFMA FMVMSQFGFS PEALFAQGVA VKSAIAVNAK AAAVAAAAAS AAVATTPEAV AAAAAAVTKA EAIDPAKVGL ALMGPGGFIK DPISAISFGM ALMFGTAGLP HILMRFFTVP DAKEARKSVF WATTWIGYFY ILIFIIGFGA ITLVLTNPEY SDVAKGVILG GAGTANMAAV LVAKAVGGNV FYGFISAVAF ATILAVVAGL TLSGASAVSH DIYATLIKKG KADSAAELKV SRITTLALGV LAVTLGIVFE KQNIAFMVSL AFAIAASANF PVLFMSVLWK DCTTKGAVIG GFLGLFSSVA LTIVSPSVWE ATLGNPKGSA WFPYSSPALF SMTIAFVSIW LISILDRSPQ AAKERALFDA QQVRSETGLG AAGASGH
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