| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2499 |
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| Symbol | |
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| ID | 6160678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2720725 |
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| End bp | 2722413 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665269 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_001791529 |
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| Protein GI | 171059180 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000000546942 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCAAGG CCATGTACGC GTCATTTTTC GGTCTGCAGC AGGAGCCGTT TTCGATCGCC
CCCGATCCGC GCTACCTGTA CATGAGCGAG CACCACCGTG AGGCCCTGGC TCACCTGCTC
TACGGCATCC GCGGCGGCGG CGGTTTCGTG CTGCTGACCG GCGAGATCGG TGCGGGCAAG
ACCACGGTGT GCCGCTGTTT CCTGGAGCAG ATCCCGGAGC AGTGCAACTT CGCCTACATC
TTCAACCCCA AGCTCACCGT GCACGAGCTG CTCAAGGCCG TGTGCGAGGA GTTCGGCGTC
GACGCGCCCT CGGCCGGCAC GCCGGGCGTG ACGGTGCAGG ACTACGTGGC GCCGCTCAAC
CGCTTCCTGC TCGATGCCCA TGCCGGCGGG CGCAACAGCG TGCTGGTGAT CGACGAGGCG
CAGAACCTGT CGGTCGATCT GCTCGAGCAG CTGCGCCTGC TGACCAACCT CGAGACCGCC
GAGCGCAAGC TGCTGCAGAT CGTGCTGATC GGCCAGCCCG AGCTGCGCGA CATGCTGGCG
CGTCCCGAGC TGGAGCAGCT GGCGCAGCGG GTGATCGCGC GTTTCCACCT CCAGCCGCTG
TCGGAGTCCG AGACCGCGCA GTACGTGCTG CACCGGCTGC GCGTGGCGGG CCTGGGTTCG
GCCTCGCCGT TCGACCGCAA GGAGCTGCAG CGCATCCACC GGCTCTCGCG TGGCGTGCCG
CGGCGCATCA ACCTGCTGTG CGACCGCGCC TTGCTGGGCG CCTATGCGCA CGGCCAGTCG
CGGGTCGGCC GCGAGGTGGT GAAGAAGGCG GCGCGTGAGG TCTTCGACGA CGCCGCCCAG
CGCGCCGCCC GCCGTGCCGC CGATCGCGGC AACCAGTTCC GCATGCTCGC CTGGGGCACC
GGCATGGTGG TGCTGGCGGT GGCGGTGGGG CTGGCCGCGA GCGCCTGGCA GAGCGGCCTG
CTGCGCCGGG TGGCCGGCGC GGCTGCGCCG GCAGGCGCCA GCTCGGCGAA CGGCCAGGGC
GCTGCGGCGC TTGCGGCCGG CGCGGCGGCG GCGGTGCCCG AAGCCGCCGG CTTCGGCGCG
CCCACCCTCG ACCGGCTCGA CGTCGCCTAC GGCTGGCGCA CCGAGCAGCA GGCCTTGCGC
GTGCTGTCGC GCGGCTGGGG CGAGCTGCTC GGCGGCGGCG ACGTCTGCGA CGAGGCCCGG
CGCAAGCAGC TGATCTGCTA TCGGTCCACC GTCAGCCTGG CGCTGGTGCA GCAGCTCGAC
CGGCCCGGCA CGCTGACGCT GGTCAACGCC AACAACCAGC GTGGCCACGT GCTGCTGCTG
GGCGTGAACG ACCAGCTGGC GCTGCTGCAG ACCGCCGACG GCCGCATCAA GGTGCCGCTG
CTGAGCCTGG CGCAGGTCTG GCGCGGCGAG TTCACGACCT TCTGGCGCGC GCCACCCGGC
TACCTCGAGC AGAGCCCGGG CTCGCAATCG ACCGCGGTGG CTCAGATGCT GAGCCAGCAG
CTGCCGGTGC CGTCGGGCCC GGACGGCGGC GCCGCATCGG CGTCGGCCGA GGCCAGCCTG
CGGGCGCGCA TCCACGCCTT CCAGGTGACC CAGGCGCTGC AGCCCGACGG CCTGATCGGG
CCGGTCACGA TGATGAAACT CAACCGCGCG CTCGGGGTCG ACGAGCCGCG CCTCGAAGTC
CTGAGGTAG
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| Protein sequence | MLKAMYASFF GLQQEPFSIA PDPRYLYMSE HHREALAHLL YGIRGGGGFV LLTGEIGAGK
TTVCRCFLEQ IPEQCNFAYI FNPKLTVHEL LKAVCEEFGV DAPSAGTPGV TVQDYVAPLN
RFLLDAHAGG RNSVLVIDEA QNLSVDLLEQ LRLLTNLETA ERKLLQIVLI GQPELRDMLA
RPELEQLAQR VIARFHLQPL SESETAQYVL HRLRVAGLGS ASPFDRKELQ RIHRLSRGVP
RRINLLCDRA LLGAYAHGQS RVGREVVKKA AREVFDDAAQ RAARRAADRG NQFRMLAWGT
GMVVLAVAVG LAASAWQSGL LRRVAGAAAP AGASSANGQG AAALAAGAAA AVPEAAGFGA
PTLDRLDVAY GWRTEQQALR VLSRGWGELL GGGDVCDEAR RKQLICYRST VSLALVQQLD
RPGTLTLVNA NNQRGHVLLL GVNDQLALLQ TADGRIKVPL LSLAQVWRGE FTTFWRAPPG
YLEQSPGSQS TAVAQMLSQQ LPVPSGPDGG AASASAEASL RARIHAFQVT QALQPDGLIG
PVTMMKLNRA LGVDEPRLEV LR
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