| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2484 |
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| Symbol | |
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| ID | 6160646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2705479 |
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| End bp | 2707080 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665254 |
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| Product | galactarate dehydratase |
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| Protein accession | YP_001791514 |
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| Protein GI | 171059165 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2721] Altronate dehydratase |
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| TIGRFAM ID | [TIGR03248] galactarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00000000132334 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAGCCA GCCCCCCGAC CCCCGCCGCC CGTCCGCCGC TGACCATCCG CATGCACGAG
CGCGACAACG TCGCCATCGT CGCCAACGAC GGCGGGCTGC CGGCGGGCAG CGTGCTGGCG
TCCGGGCTGG TGCTGGTCGA CCGCGTGCCG CAGGGCCACA AGGTGGCGCT GGTCGATCTG
GCGGGCGGGG CACCGGTGCT GCGTTACGGC ATCCCGATCG GCTACGCGCT CAAGGACATC
CCGGCGGGCA GCTGGGTGCA CGAGCGCCTG CTCGACATGC CTGACGCGCG CGGGCTCGAC
GACCTGCCGA TCGCCACCGT CAAGCCCGAA CCGCTGCCGC CGCTCACGGG CTACACCTTC
GAGGGCTACC GCAACGCCGA CGGCTCGGTG GGCACGCGCA ACATCCTGGC CATCACGCAG
ACGGTGCAGT GCGTGGCCGC CGTCACCGAT TTCGCGGTGC AGCGCATCAA GGCCGAGCTG
CTGCCGAAGT TTCCCAACGT CGACGACGTG GTCGCGCTCG AGCACGGCTA CGGCTGCGGT
GTGGCGATCG ACGCGCCCGA CGCGCCGGTG CCGATCCGCA CGCTGCGCAA CATCAGCCTG
AACCCGAACT TCGGCGGCGA GGTGATGGTG GTGAGCCTGG GCTGCGAGAA GCTGCAGCCC
GAGCGCCTGC TGCCGCCGGG CAGTTTTGCG ATCGTGGATG AGCGCAGCGT CGCCGATGTC
GGCGCCAACG AGGCCGCCAC GCTCGACGTG GTCTGCCTGC AGGATGACGC GCACGTCGGC
TTCATGTCGA TGGTCGACTC GATCCTGCGC CAGGCCGAGG AGCACCTCGA ACGCCTGAAC
GCCCGCCGGC GCGAGACGGT GCCGGCGAGC GAGCTGGTGG TCGGCGTGCA GTGCGGCGGC
AGTGACGCGT TTTCAGGTGT CACGGCCAAC CCGGCGGTGG GTTTCTGCAC CGACCTGCTG
GTGCGCGCGG GCGCGAGCGT GATGTTCTCC GAGACCACCG AGGTGCGCGA CGGCATCGAC
CAGCTCACCT CGCGCGCCAG CACGCCCGAG GTGGCCGAGG CCGTGATCCG CGAGATGGCG
TGGTACGACG CCTACCTCCG GCGTGGCGGC GCCGACCGCA GCGCCAACAC CACGCCGGGC
AACAAGAAGG GCGGGCTGTC GAACATCGTC GAGAAGGCGA TGGGCTCGAT CGTCAAGTCG
GGCTCGGCGC CGATCTCCAA CGTGCTGTCA CCGGGCGAGA AGTTGAAGCA CAAGGGCCTG
ACCTACGCCG CCACGCCCGC CAGCGACTTC ATCTGCGGCA CGCTGCAGCT GGCCGCCGGC
ATGAACCTGC ACGTCTTCAC CACCGGCCGC GGCACGCCCT ACGGCCTGGC GCAGGTGCCG
GTGATCAAGG TCGCCACGCG CAGCGACCTG GCGCGGCGCT GGCACGACCT GATGGACGTC
AACGCCGGCA GCATCGCCGA CGGCACGGCC ACCATCGAGC AGGTCGGCTG GGAGCTGTTC
CGCCTGATGC TCGACGTCGC CAGCGGCCGT CGCAAGACCT GGGCCGAGCA CTGGAAGCTG
CACAACGCGC TGGTGCTGTT CAATCCCGCT CCGGTGACCT GA
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| Protein sequence | MQASPPTPAA RPPLTIRMHE RDNVAIVAND GGLPAGSVLA SGLVLVDRVP QGHKVALVDL
AGGAPVLRYG IPIGYALKDI PAGSWVHERL LDMPDARGLD DLPIATVKPE PLPPLTGYTF
EGYRNADGSV GTRNILAITQ TVQCVAAVTD FAVQRIKAEL LPKFPNVDDV VALEHGYGCG
VAIDAPDAPV PIRTLRNISL NPNFGGEVMV VSLGCEKLQP ERLLPPGSFA IVDERSVADV
GANEAATLDV VCLQDDAHVG FMSMVDSILR QAEEHLERLN ARRRETVPAS ELVVGVQCGG
SDAFSGVTAN PAVGFCTDLL VRAGASVMFS ETTEVRDGID QLTSRASTPE VAEAVIREMA
WYDAYLRRGG ADRSANTTPG NKKGGLSNIV EKAMGSIVKS GSAPISNVLS PGEKLKHKGL
TYAATPASDF ICGTLQLAAG MNLHVFTTGR GTPYGLAQVP VIKVATRSDL ARRWHDLMDV
NAGSIADGTA TIEQVGWELF RLMLDVASGR RKTWAEHWKL HNALVLFNPA PVT
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