| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2478 |
|---|
| Symbol | |
|---|
| ID | 6160464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2697989 |
|---|
| End bp | 2698867 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641665248 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001791508 |
|---|
| Protein GI | 171059159 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000000812346 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCT TGCAGACCGA GTTCCGCCGC CTCTACCACC CCCATCCGGC CGGTGCGGCC
GGTGCGGCCG GGGCGGACGG CGACCCGGAG GGCCTGATCG ACGCGCAGGG CCGGGTCCGC
GCCCTGGTGC TGGAGCTGGC CCGTCCGGCC GACTGGGATC GGCTCGGCGA GGTGTGGCGT
GGCGTGCAGG CCGACCTGGG CCTGCCGGCG CCGGCCATCG CGGTCTCGGG GACGGACGGG
CTGCAGCTCT GGTTCTCGCT CGGCGAGCCG CTGGACGCGG CGCAAGCCCA TGCCTTCCTG
GTGGCGTTGC GCAGCCGTTA TCTGCCGGAC GTGGCCGCGC AGCGCATCGC CCTGATGCCG
GCGCCGGACG CGTCATCGAC AGCAGCGCAG CCGCATGCCC CGAAGGTGCC AGCCCGGAAC
GAATCGACCG GCGACTGGTC GGCCTTCGTC GCCCCGGACC TGGCGCCCAT CTTTGCCGAG
ACACCCTGGC TCGACCTGCC GCCGGGTGAC GAGGGCCAGG CCAACCTGCT GGGCCGGCTG
GCGAGCATCA GGCCGCCGCA ACTGGCGGCC GCGCTCGCGC AGCTCGAACC GGCGGCGCCA
TCGACGGCCA GCCCGTCGAC AGACAAGCCT GCGGCGGCCA CCAGCGACAG CTGCCCGACG
CCCGGCTCGG CGATCGGCTC GACCCGGTAT CCGGAGCCCG GCAGCTTCCT GCTGGCGGTC
ATGAACGACG CGTCCGTGCC GCTGGCGCTG CGCATCGAAG CCGCCAAGGC GCTGCTGCCC
TACGCCGACG TCACGCGCCA GATGACGTTG CCCACGTCGT CGGCCACCAG CAGCGAGGCC
GCGTCGGGCC CGATCACGAC GCCGACCGGG CGGCCGTAG
|
|---|
| Protein sequence | MNRLQTEFRR LYHPHPAGAA GAAGADGDPE GLIDAQGRVR ALVLELARPA DWDRLGEVWR
GVQADLGLPA PAIAVSGTDG LQLWFSLGEP LDAAQAHAFL VALRSRYLPD VAAQRIALMP
APDASSTAAQ PHAPKVPARN ESTGDWSAFV APDLAPIFAE TPWLDLPPGD EGQANLLGRL
ASIRPPQLAA ALAQLEPAAP STASPSTDKP AAATSDSCPT PGSAIGSTRY PEPGSFLLAV
MNDASVPLAL RIEAAKALLP YADVTRQMTL PTSSATSSEA ASGPITTPTG RP
|
|---|
| |