| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2472 |
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| Symbol | |
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| ID | 6161871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2689389 |
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| End bp | 2691788 |
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| Gene Length | 2400 bp |
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| Protein Length | 799 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641665242 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_001791502 |
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| Protein GI | 171059153 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000462783 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACGCG TGGCGCAGCG CGGCGCCGTG GCCCTGCTGG CGCTGGCCGC GCTGCTGTTC
GGGCTCGACC GGGCCTTTCC GCTGCCGGCC CAGGCGCGCC TGGGCGCGGT CAGCGACGGC
ACGCGGGTCG TGCTGGCCCA CGACGGCACG CCGCTGCGCA CCTGGCCCGG CGCCGACGGC
AGCCTGCGCC AGCCGATCAC GCCCGATGCG GTGTCGCCGC TGTACCTCGA AGCGCTGCGC
CATTACGAGG ACCGCTGGTT CGACTGGCAC CCGGGCGTCA ACCCGCCCGC CCTGCTGCGC
GCGGCCTGGC AATGGGCGCG GCAAGGCCGC ATCGTCTCGG GCGGATCGAC GTTGACGATG
CAGGTGGCGC GCCTGCTCGA CCCGTCGCCA TCGGCACCAC GCAGCCTGGC CGCCAAGCTG
CGCCAGATCG CCCGGGCGCT GCAGCTCGAG GCGCACCTGA GCAAGGCGCA GATCCTGACG
CTCTACCTGA ATCACGCACC GATGGGCGGC CAGATCGAGG GCGTCGAGAT GGCCGCGCGC
GCCTACCTCG GCAAGCCGGC GCGCACGCTC AGCCACGCCG AGGCGGCGCT GCTGGTGGCG
CTGCCGCAAG CCCCGTCGCG GCTGCGGCCC GACCGCGCCG CCGGTGCGGC CCAGGCGGCG
CGCGACAAGG TGCTGCAGCG CATGCGCACG CTGGGCATCT GGGACGCGGC CACGGTGGCC
GATGCACGGC TCGAGCGCGT GTTCGCCCCA CCGCTGCGCG CCCGCTGGCT GGCGCCGCTG
GCCGCCGAGC GCCTGCGCCA GGCGGCGCTG CGATCGAGCA GAACCGGCGA CGCCGCCGCG
CCGATCATTG CCAGCACGCT CGACGCCGGC GTGCAGCTGC GCCTGGAGCA GGTGCTGCTC
GACCGCCTCG GCAGCCTGCC CGACCCGGTG TCGATTGCCG CGCTGGTGGT CGAGAACGAC
ACGCTGGCGG TGCGCGGCTA CGCCGGCTCG GCCGATTTCA CCGACAACAG CCGCGCGGCC
CACGTCGACA TGGTGCGCGC GGTGCGCTCG CCCGGCTCGA CGCTCAAGCC GTTTCTGTAC
GCGATGGCGC TCGACGACGG GCTGGTGCAT TCCGAGAGCC TGCTGATCGA CGCGCCGCAG
AGCTTCGGCG GCTACGCGCC GGGCAATTTC GAGGCGGCGT TCAGCGGGCC GGTGAGCGTC
AGCGACGCGC TGCAGCGCTC GCTCAACGTG CCGGCGGTCG ACCTGCTGGA GCGCATCGGC
CCGGCGCGTC TTGCCGCGCA GCTGCGCAAT GCCGGGCTGC GCCTGCGTTG GCCCGCGGGC
GGTGCGCCCA ACCTGAGCCT GATCCTCGGC GGCGGCGGCA CCACGCTCGA GGAACTGGTC
GGCGCCTACA CCGCGCTGGC ACGCGACGGC GTGGCCGGGC TGCCGCGGCT GACGCCCGAG
GCGCCGTTGA TCGAGACCCG GCTGATGAGC GCGGGCGCCG CCTTCATCGT GCGCGAGATC
CTCGAAAACG GCGGTCGCCC GGATGCACCG TTTCGCGAGT CGTCGGCCCG CGTGGCCTGG
AAGACCGGCA CCAGCTTCGG TTTCCGCGAC GCCTGGGCGG TCGGCGTGAC CGACCGCTAC
ACGGTCGGCA TCTGGGTCGG CCGGCCCGAC GGCACGCCCA ACCCCGGCCA CTTCGGCGCC
AACACGGCGG CGCCGCTGGT CAAGGATCTG CTGGCCGCGC TCGGTGCACC GGGCGCCACC
ACCACCGGGC CGCGCAGCGT GCCCGCCGGC GTGCGCGCGC TCGACATCTG CTGGCCGCTC
GGCCTGGCCG CCGAGGCGAC GCCGCCGGAC CAGTGCCGCG TGCGCCGCGC CGCCTGGACG
CTCGACGGCA CCGCGCCGCC GACGCTGCCC GACCGCGTGC GCAGCGGCGG CCTGATCGAG
ACCGCGTGGG TCGACGCTCG CCACACCCGG CGCCTGCGTC CCGGCTGCGA AACACGCGCA
CCGAGGCACA CGCCGACGCC GATGTCGACG CCCGCCGCCA CCCGCTGGGT GCCGCTCGAA
TACGTCCGCT GGCCGACGCT GCTGGAGCCG TGGATCGAAC GCAGCCTGCG CAGCGAGGCC
GAGCGCATCC CCTGGGCCGC CGACTGTGCG GCGCGTGGCC CGAGCCGCGC GCTGCGCATC
ACCGGCATCG AACACGGCAG CGTGATCCGC CCGGCGCCGG GCAGCCCGGC GGCCGTCGTG
CGGGTGCAGG TGGTGGGCTC GCGCGAGCGG GTCGACTGGC TGCTCGACGG CCGGCTGGTC
GGCAGCACCG AGCCCCACGG CGAGGGCCTG CGCCTGACGC TCGGTCGGAC CGGCGAACAC
GCGCTGACGG CGATCGATCC GCAAGGCCGT TTCGAGCGGG TGCGCTTCAG CGTGCGCTGA
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| Protein sequence | MKRVAQRGAV ALLALAALLF GLDRAFPLPA QARLGAVSDG TRVVLAHDGT PLRTWPGADG
SLRQPITPDA VSPLYLEALR HYEDRWFDWH PGVNPPALLR AAWQWARQGR IVSGGSTLTM
QVARLLDPSP SAPRSLAAKL RQIARALQLE AHLSKAQILT LYLNHAPMGG QIEGVEMAAR
AYLGKPARTL SHAEAALLVA LPQAPSRLRP DRAAGAAQAA RDKVLQRMRT LGIWDAATVA
DARLERVFAP PLRARWLAPL AAERLRQAAL RSSRTGDAAA PIIASTLDAG VQLRLEQVLL
DRLGSLPDPV SIAALVVEND TLAVRGYAGS ADFTDNSRAA HVDMVRAVRS PGSTLKPFLY
AMALDDGLVH SESLLIDAPQ SFGGYAPGNF EAAFSGPVSV SDALQRSLNV PAVDLLERIG
PARLAAQLRN AGLRLRWPAG GAPNLSLILG GGGTTLEELV GAYTALARDG VAGLPRLTPE
APLIETRLMS AGAAFIVREI LENGGRPDAP FRESSARVAW KTGTSFGFRD AWAVGVTDRY
TVGIWVGRPD GTPNPGHFGA NTAAPLVKDL LAALGAPGAT TTGPRSVPAG VRALDICWPL
GLAAEATPPD QCRVRRAAWT LDGTAPPTLP DRVRSGGLIE TAWVDARHTR RLRPGCETRA
PRHTPTPMST PAATRWVPLE YVRWPTLLEP WIERSLRSEA ERIPWAADCA ARGPSRALRI
TGIEHGSVIR PAPGSPAAVV RVQVVGSRER VDWLLDGRLV GSTEPHGEGL RLTLGRTGEH
ALTAIDPQGR FERVRFSVR
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