| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2470 |
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| Symbol | |
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| ID | 6161869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2681950 |
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| End bp | 2684109 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665240 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001791500 |
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| Protein GI | 171059151 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000357603 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAGAT CCACGGACCC GGTTCTGTCC GCCACGTCAC CCGCGATCTG GGCCGCCAGG
CTGCTCGGCG TCGCGGTCGT CTACTACCTG GGCGCGCGGC TCGGGCTGCT GATCCCCTAC
GTCGGCACCC ATGTCTCGCT GGTGTGGCTG CCGACCGGGA TCGCGATCGC CGCCTACCTG
CGCTGGGGCG GCCTGATGTC GATCGGCGTC ATGGCGGCCG CCTTCGCGGT CAATGTCGAG
ATCGGCGGGC CGCCGTGGAT GGGGCTGGGC ATCGCCGCCG GCAATGCGCT GGGGCCGTGG
CTGAGCACGC GGCTGTTGCG GCGCTGGGGC TTCGATCCGG CCCTGACACG GCGCAACGAC
CTCGGCGTGT ACCTGCTGGC GGCGATGGCC GGCATGGTGG TCACCGCGAG CAACGGCACG
GCCTGGCTGC GGGTGGCCGG CCTGCTGCCC GAGTCGATCT GGGTCTCCGC CTGGATGTCG
TGGTGGGTGG GCGATGCCGT CGGCGCCTTG CTCGGCGGCG TGCCGCTGGT GGCGCTCACC
GCTGCCACGT CACGCACCAC GTTCGGCGGT CGAGCCGGCC TGATCAACCT GCTGCTGCTG
GGCGTGGTGC TGGTCTGCGG CACCCTGAGC TTCTCGCCCT GGGTGGCACC GGCGCTGCTG
TTTCCGCTGC TGTCGCTGCC GCTGTTCGTG ACGGCGGTGC TCGCGCTGCG TGCCGGCGTG
CTCGCCGCGT CGCTGTCGGT GCTGCTGCTG TCGGGCGCGG TGGCGTGGGG GACTGCCAAT
GGGGTCGGCC CGTTTGCCGG CCACGATCCG CATGCCGGAC TGCTCGCGCT GTGGAGCTAC
ATCACGGCGC AGGCCTGCAC CAGCGTGCTG ATCTGCGCGC TGGCGGCCGA GCTGCTGTCG
AGCCAGCGGC AGCAGGCGGC GCTGTTCGAG CACGCCAACG AAGGCATCCT GCTGGTCGGC
CCCGACGGCA GGGTCGGCGC GCTCAACCCG TCCGCCAGCG CCCTGCTCGG CATCGAGCCG
GCCGATGTCC TCGGCAGGCC GCTGGCCGAG CTGGCGCACA CCGGCGCGGC GCTGGCGAAG
TGGCTGGCTG CGGCGCAGCC GTCTGCACCG GTGTCGCCCG ACCTGCAGCT GACACGCGGC
GACGGCCGGA CGCTGCAGAT CGAGCCGCAG ACGGCCCGCC ACATCGACGC CCGCGGCCAG
TGGCAGACCC AGCTGATGCT GCGCGACGTC ACCGAGCGCA AGGAGGCGCA GGCCCGACTG
GCGGCCAACG AGGAGCTGCT GCGCCTGATC ACGAACAACC TGCCCGCGCT GATCGCCTAC
TTCGATCGCG AGCACCGCTT CGTGTTCGCC AACCAGACTT ACGCGGACTG GTTCGGCATC
GCGCCCGACA GCCTGATCGG CCGGACCTTC GGCGATTGCC TCGGCGCGGC GTTCCACGCG
GCCCGCAAAC CCGTCATGGA CGAGGTGCTG CGCAGCGGAA GGCGCCAGAC CCTGGAGGGC
CTGACCGACC GCGGCGGGCG CGAGCGCCAT CTGCGCAGCA CTTACGTGCC CGATGTGCGC
AGCGACGGCT CGGTGGCGGG CCTGTACGCG ATGAGCATGG ACATCTCGGA GCTGAAGGCG
GTCGAGGCGC AGCTGCGCCA GCTCGCCCGT GTCGACCACC TGACCGGGCT GGCCAACCGC
CTGCAGTTCG ACGACCGGCT GCACGAGGCC CTGCGGCGCG CACGGCGCAC GGCGCTGAAG
CCGGCCCTGC TGTACATCGA CATCGATCAC TTCAAGGGCA TCAACGACCG CCACGGCCAC
GCCGCCGGCG ACGCGGTGCT GACCGAATTC GCGCGTCGGC TCAAAGGCGC GGTGCGTGAC
ACCGACACCG TCGCGCGCCT GGGCGGCGAC GAATTTGTCG TGCTGCTCGA ACAGCTGCAC
GACCAGGACG AGGCCCGGCG GGTGGCGTCG AAGATCCACG CGGTCATGCA GACCCCGTTC
GATCTGGCGG CGGGGTTCCT GCCTGCCACC GCCAGCATCG GCGTCGGCCT GCTGACCGGC
GATGTCGACG CCAGGAGCCT GAAGGCCCTC ATGGCGACCG CCGACGCTGC GCTCTACGAG
GCCAAGCACG CGGGCCGCAA CACGTTCCGG CTGCGGACCC ACGGCGAAAA CCCCGCCTGA
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| Protein sequence | MIRSTDPVLS ATSPAIWAAR LLGVAVVYYL GARLGLLIPY VGTHVSLVWL PTGIAIAAYL
RWGGLMSIGV MAAAFAVNVE IGGPPWMGLG IAAGNALGPW LSTRLLRRWG FDPALTRRND
LGVYLLAAMA GMVVTASNGT AWLRVAGLLP ESIWVSAWMS WWVGDAVGAL LGGVPLVALT
AATSRTTFGG RAGLINLLLL GVVLVCGTLS FSPWVAPALL FPLLSLPLFV TAVLALRAGV
LAASLSVLLL SGAVAWGTAN GVGPFAGHDP HAGLLALWSY ITAQACTSVL ICALAAELLS
SQRQQAALFE HANEGILLVG PDGRVGALNP SASALLGIEP ADVLGRPLAE LAHTGAALAK
WLAAAQPSAP VSPDLQLTRG DGRTLQIEPQ TARHIDARGQ WQTQLMLRDV TERKEAQARL
AANEELLRLI TNNLPALIAY FDREHRFVFA NQTYADWFGI APDSLIGRTF GDCLGAAFHA
ARKPVMDEVL RSGRRQTLEG LTDRGGRERH LRSTYVPDVR SDGSVAGLYA MSMDISELKA
VEAQLRQLAR VDHLTGLANR LQFDDRLHEA LRRARRTALK PALLYIDIDH FKGINDRHGH
AAGDAVLTEF ARRLKGAVRD TDTVARLGGD EFVVLLEQLH DQDEARRVAS KIHAVMQTPF
DLAAGFLPAT ASIGVGLLTG DVDARSLKAL MATADAALYE AKHAGRNTFR LRTHGENPA
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