| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2455 |
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| Symbol | |
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| ID | 6163344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2665915 |
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| End bp | 2666670 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665225 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001791485 |
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| Protein GI | 171059136 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000407954 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACACTGC GACTCGCCGG CAAGACCGCC TTCATCACCG CCGCCGGCCA GGGCATCGGC
CGCGCCACGG CCATCGCCTT CGCCGCCGAG GGCGCACGCG TGATCGCCAC CGACATCAAC
GCCGAGTCGC TCGACACCCT GCGCGCCGAG ACCGGCTGCA CCACCCACCG CCTGGACGTT
ACCGACGCGG TGGCCGTCAG CGCGCTGGCC GAGGCCACCG GCGCGATCCA GGTGCTGTTC
AACGGCGCGG GCATCGTGCA CGCCGGCACG GTGCTCGACA GCACCGATGC CGAGTGGGAT
CTGGCCTTCG ACCTCAACGT GCGCTCGCAG TACCGCCTGA TCAAGGCCTT CCTGCCCGGC
ATGCTGGCGC AGGGCGGCGG CTCGATCATC AACGTGGCCT CGATCGTCGG TGCCCTCAAG
GGCGCGCCCA ACCGCTTCAT CTACATGGCC ACCAAGGCCG CCGTGGTGGG GCTGACCAAG
TCGGTGGCCG CCGACTACGT GACCCGCGGC ATCCGCTGCA ACGCGATCTG CCCGGGCACG
GTGATGTCGC CCTCGCTGCA GCAGCGCATG GAAGAGCAGG CCCGCGCCAG CGGCCAGCCC
ATCGAGGCGG TGCAGGCTGC CTTCATGGCG CGCCAGCCCA TGGGCCGGCT GGGCCGGGCC
GAGGAGATCG CCGCCCTGGC CGTGTACCTG GCCAGCGACG AATCGGCCTT CACCACCGGC
ACGACCCAGC TCATCGACGG CGGCTGGGCG ATCTGA
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| Protein sequence | MTLRLAGKTA FITAAGQGIG RATAIAFAAE GARVIATDIN AESLDTLRAE TGCTTHRLDV
TDAVAVSALA EATGAIQVLF NGAGIVHAGT VLDSTDAEWD LAFDLNVRSQ YRLIKAFLPG
MLAQGGGSII NVASIVGALK GAPNRFIYMA TKAAVVGLTK SVAADYVTRG IRCNAICPGT
VMSPSLQQRM EEQARASGQP IEAVQAAFMA RQPMGRLGRA EEIAALAVYL ASDESAFTTG
TTQLIDGGWA I
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