| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2454 |
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| Symbol | |
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| ID | 6161647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2664994 |
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| End bp | 2665857 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665224 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_001791484 |
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| Protein GI | 171059135 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000897324 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCTCC TCCGCCACGG CCCCAAGGGC CAGGAAAAGC CCGCCCTGCT GCACACCGAC
GGCACGCTGC GTGACCTCAG CGCCGTGCTG CCCGATATCG GCCCGGCCCA GCTCTCGCCC
GCCGGCCTGG CCGCGCTGGC CCGCATCGAC GCCGGCACGC TGCCCGTCGT GCCGCAAGGC
CGCCTGGCCG TGCCCTGGAC CGGCATGCGC AAGTTCATCG CCATCGGCCT GAACTACGCC
GACCACGCGG CCGAAGCGAA CATGCCGATT CCCAAGGAGC CGATCGTCTT CACCAAGACG
GTCGATTGCG CCGTCGGCTG CAACCACCCG GTGGTGCTGC CGCAGGGTTC GGTCAAGTCC
GACTGGGAGG TCGAACTCGG CGTGGTGATC GGCAGCCGCG CCCGCTACGT CAGCGAGGCC
GACGCGCTCG CGCACGTGGC CGGCTACTGC ACCATCAACG ACGTGTCCGA GCGCGAGTAC
CAGCTCGAGC GCGGCGGCAC CTGGGACAAG GGCAAGGGCT GCGACACCTT CGGCCCGATC
GGCCCCTGGC TGGTCAGCGC CGACGAGGTG GGCGACCCGC AGAACCTGTC GATGTGGCTG
GACATCAACG GCGTGCGCAA GCAGACCGGC AGCACCCGCA CCATGATTTT CACGGTGGCG
CAGATCGTCA GCTACCTGAG CCGCTTCATG ACGCTGGAGC CCGGCGACGT GATCACCACC
GGCACCCCGC CGGGCGTGGG CATGGGGCAG AAGCCCGCGC CCGAGTACCT GAAGGCCGGC
GACGTCATCA CGCTGGGCAT CGAGAAGCTG GGCGACCAGC GACAGACCGT GCACGCCTGG
GATCCGGCGC TGATCGACGG TTGA
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| Protein sequence | MKLLRHGPKG QEKPALLHTD GTLRDLSAVL PDIGPAQLSP AGLAALARID AGTLPVVPQG
RLAVPWTGMR KFIAIGLNYA DHAAEANMPI PKEPIVFTKT VDCAVGCNHP VVLPQGSVKS
DWEVELGVVI GSRARYVSEA DALAHVAGYC TINDVSEREY QLERGGTWDK GKGCDTFGPI
GPWLVSADEV GDPQNLSMWL DINGVRKQTG STRTMIFTVA QIVSYLSRFM TLEPGDVITT
GTPPGVGMGQ KPAPEYLKAG DVITLGIEKL GDQRQTVHAW DPALIDG
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