| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2451 |
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| Symbol | |
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| ID | 6161644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2660289 |
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| End bp | 2662829 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665221 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001791481 |
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| Protein GI | 171059132 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00414748 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACCGGC CCGAGCCGTC GCGTGACAGC GCCGCCAATC CGGCGCGCCG CATCGGCCTG
ATCTACGCGG CCTTCGCGTC GGCCTGGATC CTGTTGTCGG ACAAGGCGGT GGAGTGGCTG
TTCTCCAGCC CGCACTCGAT CACGCTGGCC GCCACCCTCA AGGGCTGGGT CTTCGTCGCG
GTGACATCGG TGGTGCTCTA CGTGCTGGTG CGGCGCCAGA CCGAGCGCGA ACGGCAGACG
CGGGCCGAGC GCCGCAAGGC TGAAGAGGCG CTGCGCGCCG AGCGCGAGCT GCTCGCCGGG
ATGAGCGCCA TCGGCCACAT CGGCGGCTGG AGCTTCGATC CGCTGACACA CGAGGGCAGC
TGGACCGAAG AGGTGGCGCG CATCTTCGAT CTCGACCCGT CGCACCCCTT CGACATGGCG
ACCGGCCTGA GCTGCTTCGA GGGCGAGTCG CGCCAGCGCA TCGATGCGGC CATCGCCGCC
GCCTGCACGC TGGGCACGCG ATACGACATC GAACTGGTGC TGAAGTCGCC GAAAGGGCGC
ATCAAGTCGG TCAGCACGGT CGGCATTCCC GAGATGCAGA ACGGCCGGGT GGTGCGGGTG
CGCGGCTATC TGCAGGACCT GAGCGAGCAG AAGCGCCTGA CGCAGGAGCT CGCCGACTAC
CGCGACCACC TCGAAGACCT GGTGCGCAAG CGCACCGTCC AGCTCGACGA GGCCCGCGCG
CGCGCCGAGG CCGCCAACCG GGCCAAGAGC AGCTTCCTGG CCAACATGAG CCACGAGATC
CGCACGCCGC TCAACGCCAT CCTGGGCCTG GCGCGGCTGC TGCGCCGCTC CACGCTCGAC
GCGCAGCAGG CCGACCGCAT CGCCAAGATC GACGACGCGG CGCACCACCT GCTCGGGCTG
ATCAGCGACG TGCTCGATCT GTCCAAGGTC GAGGCCGGCC GCCAGGCGCT CGATGCCGAC
GATTTCGAGC TCGGTGCGCT GATGGCCCAG GTCGGCAACG CGGTGGCGCA TCAGGCCGCC
GCCAAGGGCC TGGCGCTGCA AATCCAGGCG CCGCCGGCGC CGCTGTGGCT GCGCGGGGAC
GCCGGCCGCC TGCGTCAGGC CTTGCTGAAC TACATGGCCA ATGCCGTGAA GTTCACGCCG
ACCGGCTGGG TGCGGTTCGA TGTGCAGTGC GAGGCCGCCG GCGAACGCGC GGTGCGGCTG
CATTTCGACG TGCGCGACAG CGGCATCGGC ATCGCGCCCG AACACCTGCC GCGGCTGTTC
AACGACTTCG AGCAGGGCGA CAAGTCGACC ACCCGGCGCT TCGGCGGCAC CGGGCTCGGC
CTGGCCGTGA CGCGATCGCT GGTCGAACTG ATGGGCGGCA GCGTGGGCGT CGACAGCGCA
CCGGGGCAGG GCAGCCGCTT CTGGCTTCAC GTCACGCTGC CGCGTGGCGT GGCGCCGTCG
CCTGCCCCGT CGCCGACATT GCACCCGGCG CCCGAAGAAG CCGTGCGGGC ACGCCACGCC
GGCGCGCGCG TGCTGCTGGC CGAAGACAAC CTGGTGAACC GCGAAGTGGC GGTCGAGCAG
CTGCAGGCCG CCGGACTCGA GGTGCTGACC GCCGAGGACG GGCTGGCGGC CGTGGCGCGG
GTGGTGGCCG ACGCGCCCGC CCTGGTCCTG ATGGACATCG AGATGCCGCT GATGGACGGC
CTGGTCGCCA CCCGCGCGAT CCGGGCCCTG CCCGGCGGCG CCACGCTGCC GATCCTGGCG
ATGACGGCCA ACGTCACGCA CGAGGTGCGC CGCGCCTGTG CCGAGGCCGG CATGAACGAC
TTCATCGGCA AGCCCTTCGA GGCCGAGAAC CTCTACGCCG CCCTGTTGCG CTGGCTGCCT
GCCCGGCTCG ACGGCGTGCC GCCCGGGCCC GCTCCCGCGC CGGACCCGAG CGCCACCGAG
CCGCACGCGG CCCTGCCCGA GCTGATCGGC ATCGACTGGG GCCTGGCCCT GGCGCGCGCC
GGCGGCCGGG CGAGCACCAG CCTGCGCATC CTGCGGCTGT TTCGCCGCAG CCATGCCGAC
GATCCCGAGC GCATCAGCAC CCTGATCGCC GCGGCGGCCT GGCCGGCGCT GCGCCGCCTG
GCCCACGCCC TGCGTGGTGC GGCCGGCAAC ATCGGCGCGG TGCAGGTCCA GCAGGCGGCC
GCGTCACTCG AGCAGATCCT GCGTGACGGC TCGTCGAGCA TCGAGCGCGA GGTGGCGGCG
CGGGCCCTGC AATCCCAGTT GCACGCGCTG TTCGTGGGCC TGGACGCGCT GGGCGAGGCG
CCCGTGTCGG CGCCGTCGGC ACCGGTGCCC GCGCTGGCAC CGCAGGCCGC GCTCGAGCAG
CTCGACATCC TGCTGGCCGC CGGCGACATG GCCTGCTATC GCCTGCTGAC CGAACAGTCC
GCGGTGCTGC AGGCCGCGCT CGGCGAGGCG TTCCGCCCGC TGGTGGCGCT GGTCGACACC
TTCCGCTACG AAGAGGCTGC CGCCCTGCTG CGCGAGGCCC GCCACAAGTC GGCGCCCGAC
CCCGGGCATC CGCACGGCTG A
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| Protein sequence | MDRPEPSRDS AANPARRIGL IYAAFASAWI LLSDKAVEWL FSSPHSITLA ATLKGWVFVA
VTSVVLYVLV RRQTERERQT RAERRKAEEA LRAERELLAG MSAIGHIGGW SFDPLTHEGS
WTEEVARIFD LDPSHPFDMA TGLSCFEGES RQRIDAAIAA ACTLGTRYDI ELVLKSPKGR
IKSVSTVGIP EMQNGRVVRV RGYLQDLSEQ KRLTQELADY RDHLEDLVRK RTVQLDEARA
RAEAANRAKS SFLANMSHEI RTPLNAILGL ARLLRRSTLD AQQADRIAKI DDAAHHLLGL
ISDVLDLSKV EAGRQALDAD DFELGALMAQ VGNAVAHQAA AKGLALQIQA PPAPLWLRGD
AGRLRQALLN YMANAVKFTP TGWVRFDVQC EAAGERAVRL HFDVRDSGIG IAPEHLPRLF
NDFEQGDKST TRRFGGTGLG LAVTRSLVEL MGGSVGVDSA PGQGSRFWLH VTLPRGVAPS
PAPSPTLHPA PEEAVRARHA GARVLLAEDN LVNREVAVEQ LQAAGLEVLT AEDGLAAVAR
VVADAPALVL MDIEMPLMDG LVATRAIRAL PGGATLPILA MTANVTHEVR RACAEAGMND
FIGKPFEAEN LYAALLRWLP ARLDGVPPGP APAPDPSATE PHAALPELIG IDWGLALARA
GGRASTSLRI LRLFRRSHAD DPERISTLIA AAAWPALRRL AHALRGAAGN IGAVQVQQAA
ASLEQILRDG SSSIEREVAA RALQSQLHAL FVGLDALGEA PVSAPSAPVP ALAPQAALEQ
LDILLAAGDM ACYRLLTEQS AVLQAALGEA FRPLVALVDT FRYEEAAALL REARHKSAPD
PGHPHG
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