| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2439 |
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| Symbol | |
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| ID | 6163645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2647556 |
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| End bp | 2648887 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665209 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001791469 |
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| Protein GI | 171059120 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.690734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCT CGACCGCGCG CAAGCCCCTG CTGGTGTCCG TGCTGGCGGC CTTGGCCGCC
CTGGCCGTGC CCGCACATGC GCAAAGCCTG CGCGAGCTCT ACGACGCTGC CCGCAGCTAC
GACGCCGGCT ACCTGGCCGC GCAGGCGCAG GCCCAGGCGA CGCAGTTCCG CGCCGCGCAG
TCCGAGTCGC TGCTGCGCCC CAACGTCGGC CTGAGCGCCG GCGCGGCGCA GTCGGTCAGC
GACACGCCGC TGGCCGGCAC CCGCAACCTG ACCGCCGCGA CGGTGGGCGT GAGCGCCGTC
CAGCCGCTCA TCAACCGCGC CAATTCGGCA GCGGTCGACC AGGCCCGCAA GTCGCTCGAA
GTGGTCGAGG CCGACCTCGC CAGCGCCGAG CAGGACCTGA TGGTGCGGGT GGCGCAGGCC
TATTTCGACG TGCTCGGCGC GGTCGACACG CTCGCCACCG CGCAGGCCAA CAAGACCGCG
ATCAGCGAGC AGCTGGCGTC GGCCAAGCGC AATTTCGAGG TCGGCACCGC CACCATCACC
GACACGCGCG AGGCGCAGGC GCGCTTCGAC CTCGCCAGCG CACAGGAGAT CGCCGCCGAC
AACGACCTGC GCACCAAGCG CATCGCGCTC GACCAGCTGA TCGGCAAGAC CGGCATCGAG
CCCACGCCAC TGGCCCAGCC GGTGGTACTG CCCAACCTGG CCAGCGACGA CGTCGAAGGC
TGGGTCGCCA AGACCGCCGA CGCGCCGCTG GTGCGCAAGG CCCGGGTCGG CTACGAGATC
GCCAAGCTCG AAACCCGCCG CGCCGACGCC GGCCACAGCC CGACGCTCGA CCTCGAAGGC
TCGATGGGCA GCGCCCACAA CTCGGGCTCG GCGGCGGTGT CGTCGGGCGG CAAGGGCGTG
TCCAGCAACG CCCGGATCGG CCTGACGCTG CGCATGCCGC TCTACAGCGG CGGCGCGATC
GACAACCGCG TCAAGGAAAC CGTGGCGCTC GAAGAAAAAT CGCGCAACGA CCTCGACACC
GCCCGCCGCG CGGTGGCGCA GGCCACGCGG CAGGTCTACT TCGGCGTGCA GTCGGGCCAG
GCGCAGGTGC TGGCGTTCGA GGCGGCCGAA TCGTCATCGA AGCTCGCGCT CGAAGCGACC
CAGACCGGCT ACCGCGTCGG CGTGCGTGTC AACCTCGACG TGCTCAATGC CCAGACCCAG
CTCTACTCGA CCCAGCGCGA CCTCGCCAAG GCGCGCTACG ACGTGCTGGT CAACGGCCTG
CGGCTGCGCC AGGCCGCGGG CGTGCTGTCG GTCGGTGACC TCGACACCAT CAACGGCCTG
CTCGGCCGCT GA
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| Protein sequence | MKLSTARKPL LVSVLAALAA LAVPAHAQSL RELYDAARSY DAGYLAAQAQ AQATQFRAAQ
SESLLRPNVG LSAGAAQSVS DTPLAGTRNL TAATVGVSAV QPLINRANSA AVDQARKSLE
VVEADLASAE QDLMVRVAQA YFDVLGAVDT LATAQANKTA ISEQLASAKR NFEVGTATIT
DTREAQARFD LASAQEIAAD NDLRTKRIAL DQLIGKTGIE PTPLAQPVVL PNLASDDVEG
WVAKTADAPL VRKARVGYEI AKLETRRADA GHSPTLDLEG SMGSAHNSGS AAVSSGGKGV
SSNARIGLTL RMPLYSGGAI DNRVKETVAL EEKSRNDLDT ARRAVAQATR QVYFGVQSGQ
AQVLAFEAAE SSSKLALEAT QTGYRVGVRV NLDVLNAQTQ LYSTQRDLAK ARYDVLVNGL
RLRQAAGVLS VGDLDTINGL LGR
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