| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2434 |
|---|
| Symbol | |
|---|
| ID | 6163640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2642668 |
|---|
| End bp | 2644509 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641665204 |
|---|
| Product | phosphomethylpyrimidine kinase type-1 |
|---|
| Protein accession | YP_001791464 |
|---|
| Protein GI | 171059115 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.527798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCAG CAAACCCGAA CACGAACACC TCGACGGACC TCGACACGCC CCCCGGCGCG
ACGCGGCGCC CGATCGTCTG GAGCATCTCG AGCAATGACG CCAGCGGCGC CGCCGGCCTG
AGCGCCGATG CGCGCGTGGC CGCCGCCTTC GGCGTCCACC TGTGCCCGAT CGTGGCCTGC
GTGACGTCGC AGAACTCGCT GTCGATCGAG CACATCACGC CGATCAGCGC GACCCTGCTC
GACGCCCAGC TCGACACGCT GGCCGCCGAC ATGCCGCCCG ACGCCATCAA GACCGGCATG
CTCGGCAGCG CCGAACTGGT GGCGGTGGTG GCCCGCTGGG TCGACCGGCT GCGCCGCCGC
AACCCCCACC TGCCGCTGGT GGTCGATCCG ATGCTGCGTG CCGGCACCGG CACCGGCTCG
GCCTTTGCCG ATGCGCTGCT GCTGGCCGCC TACCAGGACG ACCTGCTGCC ACGCGCCACC
GTGATCACGC CGAACCGGCG CGAGGCGCGC GCCCTGCTCG ATCACGATGA CAGCGGCAAC
CTGCCGATCC AGCCCGATGC GGTCGCGCCG CGCGGCACCG ATCACGCAGC GGTCGCGGCC
CGCCTGGGGC CGGCGCCCGA ACTCGCCGCC GTGCCGGCGA TGGCGCGCGC GCTGCGAGCG
GCGGGCGCCA AGGCGGTCTG CATCACCGGC GGCCACGGTG ACGACAACGG CAGCGACAGC
ACCGCCCACA ACCCGGCCGG GCTGGTGCTC GACTGGCTCG ACAGCGAGCT GGCCCAAGGC
TGGATCGCGC TGCCGAAGGT CGAGACCCGC AACTACCGCG GCAGCGGCAA CACCCACGCC
ACCGCGCTGG CCGCGGCGCT GGCACGCGGC TTCGTCGACG CCGATGCCGC GGTGCTGGCC
AAGATGGCGA GCACCGCGGC ACTGCGCCAC GGTTACGCCG CCGGTGCGGG CGTCGGGCCG
GTGGGCACGG CCGAAGGTTT CATCACCGAT GCGAGCCTGC TGCCCCGCAT GAGCTGGGGC
AACGATGCGC AGGCGCTGGC GATCGCTGCA GCCGGCACCG CCACGGCCGG ACAGCCGCTG
CGCTCCGGTT ATTACGCGCT GGTCGACGAC GCCACGCGCA TTCCCGCGAT CCTGGCGGCC
GCGTCGAGCG ACCTGTGCGC GCTGCAGCTG CGCATCAAGC GCGAGGCCCA TTCCGACCTC
GACGACGCGG CCTTCCAGGA CCACGTGCAG ACCCAGATCG CTGGCGCGGC GGCGCAGTTG
CGCGGCAGCG CCATCGCGCT GATCGTCAAC GACCACTGGC CGACCGCCGC CGCCGCGCTC
GCACGGCGCG GCGATGCGCT GGCTGGCGTC GAACTGGGCG TTCACCTCGG CCAGGCCGAC
CTCGAGATCC TCGGCCCCGA CGGCCGCGCC GCACTGCGCC AGGCCGTCAC CGGCCAGCAG
CCGGGCGCTG CGCCGCTGGC GCTGGGCATC AGCTCGCACA GCCTGTGGGA GCTGGCACGT
GCCGCCAGCC TGGCGCCCAG CTACATCGCC TGCGGCCCCG TCTGGCCGAC GCTGACCAAG
GCGATGCCGT GGCGCGCCCA GGGCCTCGAC AACCTGCGCT GGTGGAGCGC GATGGCCCCC
GCGCCGGTGG TCGCGATCGG CGGCGTGCTG CAGCCCGACC AGGCCCGGGA CTGCGTGGCA
GCCGGCGCAA GCGCGGTCTG CCTGGTGCGG GCGCTCGATG GCGACGCGCT GGCGGGATGG
CCGGCCTGGC GTGAGGCCTG GCAGCGCGGG CGTGAAGCGA CGGCCACGCA GCCGGCGGTC
GCCTGGCCGC ATCCGAGCCT GGACGCAGCG ACGGCGCACT GA
|
|---|
| Protein sequence | MQAANPNTNT STDLDTPPGA TRRPIVWSIS SNDASGAAGL SADARVAAAF GVHLCPIVAC
VTSQNSLSIE HITPISATLL DAQLDTLAAD MPPDAIKTGM LGSAELVAVV ARWVDRLRRR
NPHLPLVVDP MLRAGTGTGS AFADALLLAA YQDDLLPRAT VITPNRREAR ALLDHDDSGN
LPIQPDAVAP RGTDHAAVAA RLGPAPELAA VPAMARALRA AGAKAVCITG GHGDDNGSDS
TAHNPAGLVL DWLDSELAQG WIALPKVETR NYRGSGNTHA TALAAALARG FVDADAAVLA
KMASTAALRH GYAAGAGVGP VGTAEGFITD ASLLPRMSWG NDAQALAIAA AGTATAGQPL
RSGYYALVDD ATRIPAILAA ASSDLCALQL RIKREAHSDL DDAAFQDHVQ TQIAGAAAQL
RGSAIALIVN DHWPTAAAAL ARRGDALAGV ELGVHLGQAD LEILGPDGRA ALRQAVTGQQ
PGAAPLALGI SSHSLWELAR AASLAPSYIA CGPVWPTLTK AMPWRAQGLD NLRWWSAMAP
APVVAIGGVL QPDQARDCVA AGASAVCLVR ALDGDALAGW PAWREAWQRG REATATQPAV
AWPHPSLDAA TAH
|
|---|
| |