Gene Lcho_2418 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2418 
Symbol 
ID6163792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2624832 
End bp2626178 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content69% 
IMG OID641665188 
Productfumarate lyase 
Protein accessionYP_001791448 
Protein GI171059099 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0015] Adenylosuccinate lyase 
TIGRFAM ID[TIGR02426] 3-carboxy-cis,cis-muconate cycloisomerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.259458 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTCCA CGATCATCGA CTCCGCCATC TTCCAGGGCA TCTTCAGCAG CGACGCGATG 
CGCCAGGTGT GGTCGGACGA AAACCGCACG CAGAAGTACC TCGACATCGA ACGCGCCCTC
GCCGTCGTGC AGGGCCGGCT CGGCCTGATC CCGCAGGAGG CGGCCGACGA GATCGTGAGC
CACTGCCACC TCGACCAGAT CGACCTGGTG AAGCTGCGCG CGCAGACCGA GCGCATCGGC
TACCCGATCC TGGGCGTGGT GTCGCAGCTC AACGCGCTGT GCCGCGACCA GCTCGGCGAG
TACTGCCACT GGGGTGCGAC CACGCAGGAC ATCACCGACA CCGCCACCGT GCTGCAGATC
CGCGAGGCGC TGACGCTGGT CGACGACGAA CTGGCGGCGA TCGCGACGGC GATGGCCAGG
CTGGCGCGCG AACACCGCCT GACGCCGGTG ATCGGCCGCA GCAACCTGCA GCAGGCGATC
CCCGTGACCT TCGGCTACAA GATCGCCGGC CTGCTGTCGG CCGTGCTGCG GCACCGCGAG
CGCATCGCGC AACTGCGTGA ACGCGTGCTG GTGGGCGAGT TCGCCGGGGC GGCCGGCACG
CTGGCTTCGC TCGAATCAGG CGCCATGGAA ACGCAGGCCG GCCTGTGCGC CGAACTCGGC
CTGGCGCAGC CGGTGATCGC CTGGCACACC ATCCGCGACA ACATCGCCGA GGTCGGCGCC
GTGCTCGGCC TGATCGGCGG CACGCTGGGC AAGCTCAGCA TGGACGTCAA GCTGATGATG
CAGACCGAGG TCGGCGAAGT GCAGGAGCCC TACTACCACG GCCGTGGCAG CAGCAGCACG
ATGCCGCAGA AGCGCAACCC GATCAGCAGC GCCTACGTGC ACGGCGCCAT CAGCGTGCTG
CGCCAGCACG CCGCGGCGCT GATGGACGCG ATGGTGGCCG ACCACGAACG CAGCACCGGC
CCGTGGCAGA TCGAGTGGAT CGTGCTGCCC GAGGCCTTCT GCCTGCTGGC CGGCGCGCTC
AAGCAGAGCC GCGTCATCGT CGAGGGCCTG GAGGTCGATG CCGACGCCAT GATGCGCAAC
ATCGAGATGA CCGGCGGCCT GGTGATGAGC GAGGCGGTGA TGATGGGCCT GGGCCCGTTC
ATCGGCCGCG AGTACGCCCA CGACCTGGTC TACGACCTGT GCCGCGAATC GCTGGCGAAG
AAGGCGCCGC TGCTCGACCT GCTGGCTGCG CATCCCGAGA TCAACCGGCA CGTCGACCGT
GCGGCGCTGG CGCGCATGCT GGACCCGGCC AACTACCTCG GCCAGTCCGG CGTGATGGTC
GATCGGGTGC TGACGCGCAT GGGCTGA
 
Protein sequence
MASTIIDSAI FQGIFSSDAM RQVWSDENRT QKYLDIERAL AVVQGRLGLI PQEAADEIVS 
HCHLDQIDLV KLRAQTERIG YPILGVVSQL NALCRDQLGE YCHWGATTQD ITDTATVLQI
REALTLVDDE LAAIATAMAR LAREHRLTPV IGRSNLQQAI PVTFGYKIAG LLSAVLRHRE
RIAQLRERVL VGEFAGAAGT LASLESGAME TQAGLCAELG LAQPVIAWHT IRDNIAEVGA
VLGLIGGTLG KLSMDVKLMM QTEVGEVQEP YYHGRGSSST MPQKRNPISS AYVHGAISVL
RQHAAALMDA MVADHERSTG PWQIEWIVLP EAFCLLAGAL KQSRVIVEGL EVDADAMMRN
IEMTGGLVMS EAVMMGLGPF IGREYAHDLV YDLCRESLAK KAPLLDLLAA HPEINRHVDR
AALARMLDPA NYLGQSGVMV DRVLTRMG