| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2410 |
|---|
| Symbol | |
|---|
| ID | 6163412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2616463 |
|---|
| End bp | 2617395 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641665180 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_001791440 |
|---|
| Protein GI | 171059091 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.372916 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTCC AACGCCAAAT CGCACAGACC GTTGCTGCAG CCGCTGTGCT GGTCTGCGCC
GGCGCACACG CCCAGAACAT CGCCGTGGTC ACCCATGGTC AGGCCAATGA CGCGTTCTGG
TCGGTGGTCA AGAACGGCGT CGAGGCCGCT GCCAAGGACT CGGGTGTCAA GGTCACCTAC
CGCGCGCCGG AATCGTTCGA CATGGTCGCG ATGAGCCGCC TGATCGATGC GGCCGTCAAC
CAGAAGCCGG ACGGCCTGGT GGTGTCGTTG CCGGACGCAT CGGCGCTGGG CGCCGCGATC
CAGCGTGCCG TCAGGGCCGG CATTCCGGTC ATCACGATCA ACTCGGGCCT GGAGTCGTCC
AAGAAGCTCG GCGCCGTGCT GCACGTCGGT CAGTCCGAGT ACGACGCGGG CAAGTCGGCC
GGCGAGCGAC TCAAGGCGAT GGGCGGCAAG AACGGCATCT GCGTCAATCA GGAAGTCGGC
AACGTCTCGC TGGACCTGCG CTGCAAGGGC TTCGCCGACG GCTTCGGCGG CAAATCCAAG
GTGGTGCCCA CCGGCAACGA GCCGTCGGAA GTGCGCGCCA AGGTCAAGGC CGCGCTGGAT
TCCGACACCT CGGTCGACAC CATCATGGCG TTGGGCGCCT CGACCGCCGG TGAGCCGGCC
CTGGCGGCCG CCAAGGACTC GGGCCGTCTG GCCAAGATCC ACGTCGCCAC GTTCGACCTG
TCGGCCGGTT TCCTGAAGGC CGTGGCTGCC AAGGAAGCCG CCTTCGCGAT CGACCAGCAG
CAGTTCCTGC AAGGCTATCT GCCGGTGTCC TTCCTGGCGC TGCACGCCAA GTTCGGCCTG
ATCCCCGGCG GCAACGTGCC CTCGGGCCCG AACCTGATCA CTGCCGACAA GGCCTCGCAG
GTGACCGAAC TGTCGGCCAA GGGCATCCGC TGA
|
|---|
| Protein sequence | MNFQRQIAQT VAAAAVLVCA GAHAQNIAVV THGQANDAFW SVVKNGVEAA AKDSGVKVTY
RAPESFDMVA MSRLIDAAVN QKPDGLVVSL PDASALGAAI QRAVRAGIPV ITINSGLESS
KKLGAVLHVG QSEYDAGKSA GERLKAMGGK NGICVNQEVG NVSLDLRCKG FADGFGGKSK
VVPTGNEPSE VRAKVKAALD SDTSVDTIMA LGASTAGEPA LAAAKDSGRL AKIHVATFDL
SAGFLKAVAA KEAAFAIDQQ QFLQGYLPVS FLALHAKFGL IPGGNVPSGP NLITADKASQ
VTELSAKGIR
|
|---|
| |