| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2408 |
|---|
| Symbol | |
|---|
| ID | 6163410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2614400 |
|---|
| End bp | 2615203 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641665178 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001791438 |
|---|
| Protein GI | 171059089 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACCA CTCAACAGAC AAGCCAGGCG CAACCCCTGG TCGAGATGCG CGACATCGAG
AAGCACTACG GCAACATCAT CGCGCTGGCC GGGGTCTCGT TCAGCGTGCA GTCCGGTGAA
TGCCACTGCC TGCTGGGCGA CAACGGCGCC GGCAAGTCGA CCTTCATCAA GACCATGTCG
GGCGTGCATG CGCCGTCGAA GGGGCAGATG CTGGTCAACG GCCAGCCTGT CACTTTCGAC
AGCCCGCGCG CGGCCATGAA CGCCGGCATC GCGACCGTGT TCCAGGACCT GGCGATGATT
CCGCTGATGT CGGTGACGCG CAATTTCTGG ATGGGCCGCG AGCCCACCAA GGGCTGGGGG
CCGTTCATGC GCTTCGACGT CCAGCATGCC AACGACGTGA CGATGGCCGA GATGACCAAG
ATGGGCATCC GGCTGCGCGA GCCCGACCAG GCGGTGGGCA CGCTGTCGGG CGGCGAGCGC
CAGACGGTGG CGATCGCCCG CGCGGTCTAC TTCGGTGCCA AGGTGCTGAT CCTCGACGAG
CCGACCTCGG CACTGGGCGT GCGCCAGACT GCCAACGTGC TGGCCACCAT CGACCGCGTG
CGCAAGCAGG GCGTCGGCGT GGTCTTCATC ACGCACAACG TCCGCCATGC CATGGCCGTG
GGTGATCGCT TCACCGTGAT CAACCGCGGC CGCACGCTGG GCACCGCCGC TCGTGGCCAC
ATCCGCGCCG AGGAGTTGCA AGACCTGATG GCCGGGGGAC AGGAACTGGC GACGCTGGAG
GGCTCGCTGG GCGGAACCAT CTGA
|
|---|
| Protein sequence | MGTTQQTSQA QPLVEMRDIE KHYGNIIALA GVSFSVQSGE CHCLLGDNGA GKSTFIKTMS
GVHAPSKGQM LVNGQPVTFD SPRAAMNAGI ATVFQDLAMI PLMSVTRNFW MGREPTKGWG
PFMRFDVQHA NDVTMAEMTK MGIRLREPDQ AVGTLSGGER QTVAIARAVY FGAKVLILDE
PTSALGVRQT ANVLATIDRV RKQGVGVVFI THNVRHAMAV GDRFTVINRG RTLGTAARGH
IRAEELQDLM AGGQELATLE GSLGGTI
|
|---|
| |