Gene Lcho_2402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2402 
Symbol 
ID6161414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2609195 
End bp2609812 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content70% 
IMG OID641665172 
ProductTetR family transcriptional regulator 
Protein accessionYP_001791432 
Protein GI171059083 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.584484 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGCG GCCGTTCCGC CACCTACGAC GATCAGCGCG AGGCCATCCT GGCCCGCGCG 
GCCGAGCTGT TTGCCGCCCG CGGTTATCCG GGCACCTCGA TGAACGAGGT CGCCGCCGCC 
TGCGGCCTGA CCAAGCCCGC GCTCTACCAC TACGTGCGCG ACAAGCAGGC GCTGCTGTTG 
CAGATCTGCG AGGACCACAT CGTCACGCTG CAGGAACTGG TCGACGAGGT CGCCGCCCGC 
CAGCTGCTGC CCGACGAGCA CCTGCGTGCG CTGATCCTGG CCTTCGTGCA GGCCTATGCC 
GACGCCCAGC ACCAGCACCG CGTGCTGACC GAGGATGTGC GGTTTCTCGG TGATGCCGAG 
CGCGAGCAGG TGCTCGAAGG CCAGCGCCAG GTGGTCGCCG CCTTTGCCCG CGCGGTGGCC 
GCGGTGCGCC CCGGCATCGC CGACGCGGCG CTGCACAAGC CGCTGACGAT GCTGCTGTTC 
GGCATGATCA ACTGGATGTT CACCTGGCTG CAGCCGGGCG GCGCCTTGAG CCACGCCGAC 
ATGGCGCCGG TGGTGGCCGA CCTGTTCCTG GGCGGCCTGG CGGCGGTGCG ATTGCCCGAG 
TCGGTTGCGT CGCCCTGA
 
Protein sequence
MARGRSATYD DQREAILARA AELFAARGYP GTSMNEVAAA CGLTKPALYH YVRDKQALLL 
QICEDHIVTL QELVDEVAAR QLLPDEHLRA LILAFVQAYA DAQHQHRVLT EDVRFLGDAE 
REQVLEGQRQ VVAAFARAVA AVRPGIADAA LHKPLTMLLF GMINWMFTWL QPGGALSHAD 
MAPVVADLFL GGLAAVRLPE SVASP