| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2401 |
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| Symbol | |
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| ID | 6161413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2607987 |
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| End bp | 2609144 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665171 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001791431 |
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| Protein GI | 171059082 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.682902 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTCA TCAAGACCCT GCTCGCTGGC GCCGCCATCG CCTCGCTCAA CCTGGCCGCC
GGCAGTGCGA TGGCGCAGAT CAAGGTCGGC GTCACGGTGT CGGCCACCGG CCCGGCCGCG
TCGCTCGGCA TTCCCGAGAA GAACACCATC GCGCTGATGC CCAAGACCAT CGGCGGCAAG
ACGGTCGAAT ACATCGTGCT CGACGACGCC TCCGACACCA CCAAGGCGGT GGCCAACACG
CGCCGCCTGA TCACCGAGGA CAAGGTCGAC GTGGTGCTGG GATCGACCAC CACGCCCAAC
TCGCTGGCGA TGATCGATGC GGTGTCCGAG GCCTCGGTGC CGATGATCTC GATGGCGGCT
TCGGCGCGCA TCGTCGAGCC GGTCGACGCC AAGAAGCGTT GGGTCTTCAA GACGCCGCAG
AACGACATCA TGATGTCGCT GGCGATCGCC ACCCACATGG CCGACAACGG CATCAGGAAG
GTCGGCTTCA TCGGTTTTGC CGATGCCTAC GGCGAAGGCT GGTTCCAGGA GTTCACCAAG
GCCGCCGGGC TCAAGGGCAT CCAGATCGTC GCCAGCGAGC GTTATGCGCG CGCCGACACC
TCGGTGACCG CGCAGGTGCT CAAGCTGATG GCCGCGCAGC CCGACGCGGT GCTGGTCGCC
GGCTCGGGCA CGCCCGCCGC GCTGCCGGCC AAGGCGTTGA AGGAACGCGG CTTCACCGGC
AAGCAGTACC AGACCCACGG CGTGGCCAAC AACGACTTCC TGCGCGTGGG CGGCAAGGAC
GTCGACGGCA CCATCCTGCC CAGCGGCCCG GTGCTGGTGG CCGACCAGCT GCCGGCCAAG
CATCCGCTGA AGAAGAGCGC CAGCGATTAC GTCGCCAAGT ACGAAGCCGC CTACGGCAAG
GGCAGCGTCA GCACCTTCGG CGCCCACGCC TGGGACGCCG GCCTGCTGAT GACCGCAGCG
GTGCCGGTGG CACTGAAGAA GGCGCAGCCG GGCACGCCCG AGTTCCGCGT CGCGCTGCGT
GACGCGATCG AGCAGGTCAA GGAACTGCCC GGCGCGCACG GCATCTTCAA CATGTCGGCC
ACCGATCACC TGGGCCTCGA CCAGCGCGCC CGCGTGATGG TGACGATCGA CAACGGCGCC
TGGAAGTACC TGCCGTAA
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| Protein sequence | MKFIKTLLAG AAIASLNLAA GSAMAQIKVG VTVSATGPAA SLGIPEKNTI ALMPKTIGGK
TVEYIVLDDA SDTTKAVANT RRLITEDKVD VVLGSTTTPN SLAMIDAVSE ASVPMISMAA
SARIVEPVDA KKRWVFKTPQ NDIMMSLAIA THMADNGIRK VGFIGFADAY GEGWFQEFTK
AAGLKGIQIV ASERYARADT SVTAQVLKLM AAQPDAVLVA GSGTPAALPA KALKERGFTG
KQYQTHGVAN NDFLRVGGKD VDGTILPSGP VLVADQLPAK HPLKKSASDY VAKYEAAYGK
GSVSTFGAHA WDAGLLMTAA VPVALKKAQP GTPEFRVALR DAIEQVKELP GAHGIFNMSA
TDHLGLDQRA RVMVTIDNGA WKYLP
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