Gene Lcho_2373 details

Gene Information

• Locus tag: Lcho_2373
• ID: 6160043
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2578529
• End bp: 2580397
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641665142
• Product: TRAP C4-dicarboxylate transport system permease DctM subunit
• Protein accession: YP_001791403
• Protein GI: 171059054
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 57
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCGCCG CCGTCGAACG CTCCGAAACC TTCACCCTGC CCGACGAGGT GCAGGCCACG 
CTGGCGCGGT CGCGCCTGAT GCTGCCGCTC GAAGCGGCGG CGGCGGCGCT GATGGCGGCC 
ATCATGCTGA TGCTGCTGGC GGGGGTGGGC TCGCGCTACC TGCTGTCCGA TCCGCTGGTG 
TGGGTGGACG AGGCGGTCTC GATCGCCTTC CTGTGGCTGG CGATGCTGGG CTCGGCGATC 
GCCATCCACC GCAACGAGCA CCTGCGGCTG ACGGTCGGTC TCAACGCCCT GCCCGTGCGG 
CTGCAGGGCT ACGTGCAGGC CTTCGGGCTG ATGGTGACGG CGGTGTTCCT GCTGGCGCTG 
GTGCAGCCGG CGTTCGAGTA CGTCGAGTCG GAAGCCTTCG TCACCACCCC GGCGCTGGAG 
ATCCCCAACA GCTGGCGGGT GGCGGCGATC GCTTTCGGCA TCGTCGCGAT GCTGGTGGTG 
GTGCTGACAC ACGCCTGGCG CACCTGCACG CTGGCGCAAC TGGCGGTCGG CACGGGCGCG 
GTGGCGGCGG TGGCCGGTGC CTGCTGGGGC GGCATGCCGG TGCTGGCCGA CCTGGGCCAC 
CTCAACATCG TGATCTTCCT GATCGGCTTC GTGGCGGTGT GCCTGGTGGC GGCGGTGCCG 
ATCGCGTTCT GCTTCGGCAT CGGCGCGGTC AGCTTCCTGG CCTTCACCAC CCACATCCCG 
ATGGGCGTGA TGATCGGCCG CATGGACGAG GGCATGTCGA GCCTGGTGCT GGTGTCGGTG 
CCGGTGTTCG TGCTGCTGGG CTGCGTGCTC GATGCCACCG GCATGGGCCG CGCGATCATC 
GATTTTCTGG CCTCGCTGGT GGGCCACGTG AAGGGCGGCA TGAGCTACGT GCTGCTGGGC 
TCGCTGTTCA TCGTCTCGGG CATCTCGGGC TCCAAGGTGT CGGACATGGC GACCGTCGCG 
CCGGCCCTGT TCCCCGAGAT GAAACGCCGC GGCCAGAAGC CCAAGGACAT GATCGCCCTG 
CTGTCCACCG GCGCGGCGAT GGCCGACACG GTGCCGCCGA GCATCGTGCT GATCGTGCTG 
GGCTCGGTGG CCGGGGTGTC GATCGCCGGG CTGTTCCAGG CCGGCGTGAC GGTGGCGCTG 
GTGCTGCTGC TGGCGCTGGC CGTGCTGGCG CGCTGGAAGG CCCGCAACGA GGTGCTGCAG 
CAGGTCAGGC GCGCGCCGCT GGCGCTGGTC GGCCGCACGC TGCTGATCGC CGGCCCGGCG 
CTGGTGCTGC CCTTCCTGAT CCGCGGCGCG GTGGGCGGCG GCGTGGCCAC GGCCACCGAG 
GTGTCGACGC TGGCGGTGGT CTACGCGATG CTCGTCGGCA TGGTGATGTA CGGCGGCATC 
GGGCCGCGCA AGATCTACGC GATGCTGGTC GAGACCGCGG CCCTCAGCGG CGCGGTGCTG 
ATGATCCTGG GCACCGCGCT GGCGATGGCC TGGGTGATCA CGCAGTCGGG CGTGGCGCAG 
CAGCTGGCCG TGTTCATGAA GACGCTGCCG GGCGGCGTGT TCGGCTTCAT GGCCGTCACG 
ATCGTGATGT TCCTGATCCT CGGCTGCGTG CTCGAAGGCC TGCCCGCGCT GCTGCTGATG 
GCGCCGCTGA TGTTCCCGAT CGCGCGTGCG ATGGGCGTCA ACGACGTGCA CTACGCGATG 
GTGGTGGTGG TGGCCATGAA CATCGGTCTG ATGATGCCGC CCATCGGCGT GGGCTTCTAC 
ATCGCCTGCC GCATCGGCGA CGTCTCGCCC GACGAGGCGA TGGGCGCGAT CTGGCCCTAC 
ATCGCCGCGC TGATCGTCGG CCTGATCGTG ATCGCGGCGG TGCCGGGGAT CTCGACCGCC 
GTGCTCTAA 

 

Protein sequence

MSAAVERSET FTLPDEVQAT LARSRLMLPL EAAAAALMAA IMLMLLAGVG SRYLLSDPLV 
WVDEAVSIAF LWLAMLGSAI AIHRNEHLRL TVGLNALPVR LQGYVQAFGL MVTAVFLLAL 
VQPAFEYVES EAFVTTPALE IPNSWRVAAI AFGIVAMLVV VLTHAWRTCT LAQLAVGTGA 
VAAVAGACWG GMPVLADLGH LNIVIFLIGF VAVCLVAAVP IAFCFGIGAV SFLAFTTHIP 
MGVMIGRMDE GMSSLVLVSV PVFVLLGCVL DATGMGRAII DFLASLVGHV KGGMSYVLLG 
SLFIVSGISG SKVSDMATVA PALFPEMKRR GQKPKDMIAL LSTGAAMADT VPPSIVLIVL 
GSVAGVSIAG LFQAGVTVAL VLLLALAVLA RWKARNEVLQ QVRRAPLALV GRTLLIAGPA 
LVLPFLIRGA VGGGVATATE VSTLAVVYAM LVGMVMYGGI GPRKIYAMLV ETAALSGAVL 
MILGTALAMA WVITQSGVAQ QLAVFMKTLP GGVFGFMAVT IVMFLILGCV LEGLPALLLM 
APLMFPIARA MGVNDVHYAM VVVVAMNIGL MMPPIGVGFY IACRIGDVSP DEAMGAIWPY 
IAALIVGLIV IAAVPGISTA VL