| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2372 |
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| Symbol | |
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| ID | 6160042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2577503 |
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| End bp | 2578519 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641665141 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001791402 |
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| Protein GI | 171059053 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATCA CCCGCCGCAC CCTGCTGGCC GGCACCGGCG CCCTCGCGCT GCCCGGCGTC
GCCACCCACG CCCTGGCGCA GAACAAGGCC GAGTTCACGC TGAAATACGC CAACAACCTG
CCCATCACGC ACCCGATGAA CGTGCGCGCC ACCGAGATGG CGGCGGCGAT CCTGGCCGAA
TCGAAGGGCC GGGTCGACCT GAAGGTGTTC CCGAGCAGCC AGCTGGGCAC CGACACCGAC
ATGCTGTCGC AGATCCGCTC GGGCGCGATC GACTACTTCA CGCTCTCGCC GCTGATCCTC
GGCACGCTGG TGCCGTCGGC GCAGATCAGC GGCGTGGGCT TCGCGTTCAA GGACTACAAC
CAGGTCTGGG CCGCGATGGA CGGTGACCTG GGCGCCCACG TGCGCAAGGA GATCGCCGCC
AGGTCGACGA TGTTCGCGTT CGACAAGATC TGGGACAACG GCTACCGCCA GATGACCAGC
AGCGCGCGCG CCATCACCAA GCCCGAAGAC CTCAAGGGCA TGAAGATGCG CGTGCCGCCG
AGCCCGTTCT GGGTCTCGAT GTTCAAGGCC TTCGAGGCGT CGCCGGCCAC CATCAACTTC
GCCGAGGTCT ACACCGCCCT GCAGACCAAG ATCGTCGACG GCCAGGAGAA CCCGCTGGCG
ATCATCGCCA CCGCCAAGCT GTTCGAGGTG CAGCAGTTCT GCTCGATCAC CAACCACATG
TGGGACGGTT TCTGGTTCCT GGCCAACAAG AAGTCCTTCG AGCGCCTGCC GGCCGATCTG
CAGGAGATCG TGACGCGCAA CGTCAACAAG GCCGGCCTGA ACCAGCGCGA CGACGTGCGC
AAGCTCAACG ACTCGCTGCT GGGCGAGCTC AAGGCCAAGG GCATGGCGAT CAACACCACC
GACGCCGAGC TGTTCCGCGC CAAGCTGCGC GCGGCCGGTT TCTACGCCGA GTGGCACAAG
AAGTTCGGCG ACGAAGCCTG GGCGGTGCTC GAGAAGTACA CCGGCAAGCT GGTCTGA
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| Protein sequence | MQITRRTLLA GTGALALPGV ATHALAQNKA EFTLKYANNL PITHPMNVRA TEMAAAILAE
SKGRVDLKVF PSSQLGTDTD MLSQIRSGAI DYFTLSPLIL GTLVPSAQIS GVGFAFKDYN
QVWAAMDGDL GAHVRKEIAA RSTMFAFDKI WDNGYRQMTS SARAITKPED LKGMKMRVPP
SPFWVSMFKA FEASPATINF AEVYTALQTK IVDGQENPLA IIATAKLFEV QQFCSITNHM
WDGFWFLANK KSFERLPADL QEIVTRNVNK AGLNQRDDVR KLNDSLLGEL KAKGMAINTT
DAELFRAKLR AAGFYAEWHK KFGDEAWAVL EKYTGKLV
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