Gene Lcho_2316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2316 
Symbol 
ID6161937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2515117 
End bp2516373 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content74% 
IMG OID641665085 
Producthypothetical protein 
Protein accessionYP_001791346 
Protein GI171058997 
COG category[R] General function prediction only 
COG ID[COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones87 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACAT CGGCGGCTCG AGGCGGGCTC GAGGGCACGG CGCCCTCCTC GCCCACGTTG 
CCCGCCACGG CCCGGCCGGG CGCCGCCGTC ACGCCCGGAC TGGCCGAGGC CCTGCTGCGG
CGCCTGGAAT GGACCGTGAT CCGCCGCCTC GACGGCCTGC TGCAGGGCGA CTGCCGCACC
CTGCTGCGCG GCACCGGGCT CGATCTGGCC GACCTGCGCG AGTACCAGCC GCACGACGAC
GTGCGCCACA TCGACTGGAA CGTGACCGCG CGCGTGGGCG TGCCCCACGT GCGGCAGTTC
CAGGAAGACC GCGACATGAC GGTGGTGTTC CTGCTCGACC TGAGCTCGTC CGTCAATTGG
GGAACCGTCT GCCCCCCGCC CGCCGAATGC GGCGGTCGAC CCCCCATGGG GATCGAACCC
GGCTTGGGGC GGCCCGGCAC CGGGTTCGAC GCGGCCGGCC CGACCGATGC GAACCGCGGG
GTGCGCACCA AGCAGCAGGT CGCCACCGAA CTGATCGCCG TGCTGGCGCG GCTGTTCACG
CGCAGCGGGC ATCGGGTGTC GGCCTTGATC TACCGCCAGG GCGGCAGCAG CACCGAAGAA
CTGCCCGCGC GCGGCGGCCG CGGCCAGGTT CTGCAGTTGC TGACCCGCAT CACCCGGCCG
CACCGACTGT CTCGAACTGA AACAGTCGCC CCGCCGTTGC CGGTTCGGGG CTGGCTGAGC
GGCTGGTTTC GTGGTAACCG CCCAGCCATC AGCCGCACCG ACGAAGCCAC CCGGCTGGCC
GATCTGCTGC AGGCTGCCGA GCACCGCCTG CGCCGCCGCT GCACCGTGCT GGTGGTGTCG
GACTTCATCA GCCAGCCCGG CTGGCAGGCG CCGCTCGGCC GGCTGGCACT GCGCCATGAC
GTGCTGGCGG TGCGACTCAG CGACCCGTCC GAACACGAGC TGCCGGCCGC CGGCCTGGTG
CTGCTGCGCG ACGCCGAAAG CGGCGAAGAA CTGCTGGTCG ACACCGACGA TCCGGCCCTG
CGCGCCCGCC ACGCCGCGCT GGCGCAAGCC CACGAGCGCC GCGTGTTGGA CGGCCTCGCC
GGCGCCGGTG TCGACACGCT CGAGCTCGGC ACCGCCGAGC CGCTGCTCGA GGCCCTGCGG
CGCTTCCTGG CACTGCGCCG CCTGCGCCGC AATCAGCGCG CGGGCGCCGC CCCGCACAGG
GCAGGCAGCG CCGGCCCGAC CACCGCGCAG CCTGCGCGGC CGGAGACACC CCGATGA
 
Protein sequence
MATSAARGGL EGTAPSSPTL PATARPGAAV TPGLAEALLR RLEWTVIRRL DGLLQGDCRT 
LLRGTGLDLA DLREYQPHDD VRHIDWNVTA RVGVPHVRQF QEDRDMTVVF LLDLSSSVNW
GTVCPPPAEC GGRPPMGIEP GLGRPGTGFD AAGPTDANRG VRTKQQVATE LIAVLARLFT
RSGHRVSALI YRQGGSSTEE LPARGGRGQV LQLLTRITRP HRLSRTETVA PPLPVRGWLS
GWFRGNRPAI SRTDEATRLA DLLQAAEHRL RRRCTVLVVS DFISQPGWQA PLGRLALRHD
VLAVRLSDPS EHELPAAGLV LLRDAESGEE LLVDTDDPAL RARHAALAQA HERRVLDGLA
GAGVDTLELG TAEPLLEALR RFLALRRLRR NQRAGAAPHR AGSAGPTTAQ PARPETPR