| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2311 |
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| Symbol | |
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| ID | 6162163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2510550 |
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| End bp | 2511473 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665080 |
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| Product | spermidine synthase-like protein |
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| Protein accession | YP_001791341 |
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| Protein GI | 171058992 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 79 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTGC TCAACAACAT CGACGGCGAA CCCGGCCTGC TGGCCCAGCG TTCGCCCGCC
CGCAAGAAAC GCGAAGCCGG CACGCGCAAG TTGCCGGTGG CCACGATCTC CGAATTCGAA
GGCGTGCGCT ACCTGCACCT GGGCCAGACG CCCTGGGTGC AGGGCGCCAT GCGGCTGCGC
AAGACCCGCG TGATCGAGCT CGAATACGTG CGCCGCATGA TGGTCTGGCT GCTGCTGCAC
GAGCCCGACC GCTGGGCCGA CCTGCACGCG GTGCAGCTGG GCCTGGGCGC GGCGGCGCTG
ACGCGCTTCT GCCACACCGA GCTCAAGATG TGCACCACCG CGGTCGAGCT CAACCCCCAG
GTGATCGCCG CCTGCCGGCA GTGGTTCCGG CTGCCGCCCG ACAGCGATCC GCGCCTGCGC
GTGATCGAGG CCGATGCCGG TGCCTGGGTG GCCGAGCCCG AACAGGCCGG CACCGCCGAC
GTGCTCAACA TCGACCTCTA CGACCACCAG GCCGCAGCGC CGGTGCTCGA CGACGACGCC
TTCTACGCCG CCTGCCACAC CCTGCTGGCC GACGACGGCG TGCTGACCGT CAACCTGTTC
GGCCGCAACG CCAGCTTCGG CCGCAGCGCC CGGCGCATCC AGGCCGCCTT CGTGCCCACG
GGCGGACAGG TCTGGATGCT CGATCCGACC GACGAGCACA ACACCATCGT GGTGGCACTC
AAGGGCCGCG GCCTGCCCCC CGCCGAGGTG CTGGCGCAGC GCGCCGGCGT GATCGAGGCA
CGCACCGGCC TGAAGGCCCG CGAGTGGCTG CCGATGCTCA AGCCGGTGCC GGTTGCACGG
GCCTCTCGGG CCAGGACGGC CGCGGCGTCG GCCACCCCCG ACGCGCCTGC CGAGGTGTCC
ACCGACCCGG CCACCGTCGC CTGA
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| Protein sequence | MTLLNNIDGE PGLLAQRSPA RKKREAGTRK LPVATISEFE GVRYLHLGQT PWVQGAMRLR
KTRVIELEYV RRMMVWLLLH EPDRWADLHA VQLGLGAAAL TRFCHTELKM CTTAVELNPQ
VIAACRQWFR LPPDSDPRLR VIEADAGAWV AEPEQAGTAD VLNIDLYDHQ AAAPVLDDDA
FYAACHTLLA DDGVLTVNLF GRNASFGRSA RRIQAAFVPT GGQVWMLDPT DEHNTIVVAL
KGRGLPPAEV LAQRAGVIEA RTGLKAREWL PMLKPVPVAR ASRARTAAAS ATPDAPAEVS
TDPATVA
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