Gene Lcho_2306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2306 
Symbol 
ID6162158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2504182 
End bp2505270 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content66% 
IMG OID641665076 
Productintegrase catalytic region 
Protein accessionYP_001791337 
Protein GI171058988 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGAC TCGAAGATCG CCGTGAGTTG ACCCGAGAAG TGGAGACGGC CCATGCCAAG 
GGGGCGCGAC TGCGACAGGC CTGCGAGATG GTGGGCATCA GCGTGCGCAC GCTGCAGCGG 
TGGAAATCGG CGGGGCTGGA GCGAGGTGAC GGCAGACCCG GTGCCGTTCG TCCCCAACCT 
GCCCGCGCGT TGAGTGCCGC CGAGCGAGAG CGGATTGTCT GCGTGGCCAA CGAGCCCCGG 
TTTGCCGACA TGCCACCCGC GCGCATCGTG CCGATGCTGG CCGACGAAGG GGTGTATCTG 
GCCAGCGAAT CCACCTTTGC GCGGGTGTTG CGCGAGCAAG GCCAGAACAT GCGCAGGGGA 
AGAGCCAGGA CGCCCAGCAC GAGCAAGCCG CCGAGCACGC ACATCGCGTG CGCGCCGGGC 
GAGGTGTGGT GCTGGGACAT GACCTATCTG CCCGCCACGG TGGTGGGGCG CTGGTTCTAC 
CTGTACCTGA TCCTGGATCT GTACAGCCGC AAGATCGTGG GCTGGGAAGT GCACGAGGCC 
GACGATGCCG ATCACGCGGC CCATCTGGTG CGGCGATGCG CGCTGGCCGA AGGCATTGCG 
GCCAAGGTCC GCAAACCCGT TCTGCACGGG GACAACGGCG CCACGCTCAA GGCCACCACG 
GTGCTGGCGA TGCTGAACTG GCTGGGTGTG AAACCGTCGT ACTCGCGCCC CAGGGTGAGC 
GACGACAACG CGTTCGTGGA AAGCCTGTTC CGCACGGCCA AATACAGGCC GGAGTTCCCG 
GTCAAGGGGT TTGCGGATCT GCAGGCCGCG CGCATGTGGG CGGCCGGCTT TGTGCATTGG 
TACAACGTCG AGCACCGCCA CAGCGGTATC CGATATGTGA GCCCGGCGCA GCGGCATGCG 
GGTGAGGACC GGGCGATTCT GGATGCACGC CACGAGCTGT ACCTGAGCGC TCGACGGGCC 
AACCCCGCAA GGTGGTCGGG GCCGACGCGC AACTGGAAAG TGATCTCGGC CGTGACGCTC 
AATCCCGAAC GGGACGCAGT CATTACGGCC CACCTGGATC AGCTCGGCAA ACAGCCCGAA 
GCTGCATGA
 
Protein sequence
MIGLEDRREL TREVETAHAK GARLRQACEM VGISVRTLQR WKSAGLERGD GRPGAVRPQP 
ARALSAAERE RIVCVANEPR FADMPPARIV PMLADEGVYL ASESTFARVL REQGQNMRRG 
RARTPSTSKP PSTHIACAPG EVWCWDMTYL PATVVGRWFY LYLILDLYSR KIVGWEVHEA 
DDADHAAHLV RRCALAEGIA AKVRKPVLHG DNGATLKATT VLAMLNWLGV KPSYSRPRVS 
DDNAFVESLF RTAKYRPEFP VKGFADLQAA RMWAAGFVHW YNVEHRHSGI RYVSPAQRHA 
GEDRAILDAR HELYLSARRA NPARWSGPTR NWKVISAVTL NPERDAVITA HLDQLGKQPE 
AA