| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2301 |
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| Symbol | |
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| ID | 6163553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2497300 |
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| End bp | 2498706 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665071 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001791332 |
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| Protein GI | 171058983 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGACC CGACGCAGGA CAACCCGAAG CAGGACGACG CCATGCAGGA CACACCGCCC
CCGGACATCG CCTCGACCAC CGCCGTGCAC CCGGCACAGG CGCCGCGCCG GCGCCGCGAC
ACCGTCTCGA ACGCCACCCG CATGGGCGAG GTGTCGCGGG CCTCGAGCCT GCTGCTGCTG
ACCATCACCG CCGGCTTCGT GGCACTGGCC GGCTGGGCCT CGGTGGCCGA GATCGACACG
GTGGCGCAGG CCCTCGGCAA GGTCATCCCG TCGGCCAAGG TGCAGATGGT GCAGAGCCTG
GAGGGCGGCA TCGTGCAGGA GATCCACGTC AAGACCGGCC AGGCGGTCGA GGCCGGCGAC
CTGCTGGTGT CGCTGAGCCA GACGCAGGTC GATGCCGACT TCCAGTCGCG CCAGCAGCAG
GCCCTGACGC ACCAGGCCCG GGTCGCCCGG CTGCAGGCCG AGGCCGATGG CCGCGAGCCG
ATGTTCGCGA CCGAGCTGCA GCGCCAGCAC CCGCAGAACG TGGCGGTCGA GCAGGCCGCG
TTCCGCAGCC GGCAGGCCGA GCAGCAGGCG CAGGCGCGCA TGCTCGACGC CCAAGTGCTG
CAGAAACGCG CCGAGCTCGA CGAATCGCGC AACGCCATGC AGACCGCGCA GCGCTCGCTG
CAGACCGCCC GCGACGAGCG CGTGATGGTG CAGAAGCTGG TCGACCAGGG GCTCGAGCCG
CGCATCGAAC TGGTCCGCCT CGACCGCCAG ATCGCCGAGG CCGAGGGCCG CTACGCCGGC
GCGCAGGTGG CGATCGAGCG CACCGAGCAG GCCATCCTCG AGACCAGCGC CCGCCGCGAC
AGCGTGCAGC GCCAGTTCCG CGCCCAGGCG CGCGATGAGC TGAATCGCGC GCTGGCCGAT
CTGCGCAGCC TGGCGCCCGC CATGCCGGCG CTCGAAGACC GGGTCGAGCG CACGGCGCTG
CGCGCGCCGG TGCGTGGCGT CGTCAACCGG GTGTTCGTCA ACAGCGTGGG TGGCGTGACA
CGGCCCGGCG ATCCGGTGGT GGAGCTGGTG CCGGTGGAGG ACAAGCTGGT GGTCGAGGCC
AAGGTCGACC CGCGCGACAT CGGATTCGTG CGCGTCGGCC AGGATGCGCG CGTCAAGCTG
ACCGCCTACG ACTACGCGAT CTACGGCGCC ATGCCCGCCA AGGTGGTGCA GGTGGGCGCC
GACGCCATCA CCAACGACCG CGGCGACAGC CACTACATCG TGCACATCGA GACCAGCCAG
GCGGCGGTCA AGTCGCTCGG CCAGGAGCTG CCGATGCTGG CGGGCATGCA GGCGCAGAGC
GACATCGTCA CCGGCTCCAA GACGGTGATG AACTACCTGC TCAAGCCGCT GGTGGGCGTG
CGCGAGAACG CCTTCCGCGA GCGCTGA
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| Protein sequence | MHDPTQDNPK QDDAMQDTPP PDIASTTAVH PAQAPRRRRD TVSNATRMGE VSRASSLLLL
TITAGFVALA GWASVAEIDT VAQALGKVIP SAKVQMVQSL EGGIVQEIHV KTGQAVEAGD
LLVSLSQTQV DADFQSRQQQ ALTHQARVAR LQAEADGREP MFATELQRQH PQNVAVEQAA
FRSRQAEQQA QARMLDAQVL QKRAELDESR NAMQTAQRSL QTARDERVMV QKLVDQGLEP
RIELVRLDRQ IAEAEGRYAG AQVAIERTEQ AILETSARRD SVQRQFRAQA RDELNRALAD
LRSLAPAMPA LEDRVERTAL RAPVRGVVNR VFVNSVGGVT RPGDPVVELV PVEDKLVVEA
KVDPRDIGFV RVGQDARVKL TAYDYAIYGA MPAKVVQVGA DAITNDRGDS HYIVHIETSQ
AAVKSLGQEL PMLAGMQAQS DIVTGSKTVM NYLLKPLVGV RENAFRER
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