| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2300 |
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| Symbol | |
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| ID | 6163552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2495081 |
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| End bp | 2497300 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665070 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001791331 |
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| Protein GI | 171058982 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCCA TGCTGCACGC CACCCGCACC GACTCTCCCG CGCCGGCCAG CGCCGTCGTC
ACCCCGCTGC CGACGCCTGC GGCCTCGCCC GCACCGCCGG TGGCCGACAG CCTGCGGACC
TGCCTGCTGT TCCTGCTCGA GCACCACGGC CGGCCGCTGT CGGCGGCGGC CTTGCGCGCG
ATGGTGGCGC GACCCGACGA GAGCTGGCAG ATCGACGACT TTGTCGATGC GATCGAGAGC
CTCGGCTTCG CGACCCGCAC CGCCCGTGCC GATGAGCCAC CCGAGCCGGC ACCGAACGAG
CCGCTGCTGC TGATCGGCGT CGACGGCGAG GCCAACGTGC TGCTGGGTCG GCGCGGCAAC
GACCGCATCG AGAACTGGGA GGTCTACCTC AGCGCCACCC GCAAGGTGGT GCAGCTCACC
CGCGCCGAGC TGCTGGCCCG CCACGGCGGC CAGGTGGTGC AGGTGCGCCC GCCGCAGCGG
GTCGCCGGCA CAGACGCCGG CGCGCCGCGC GGGCGCCACG GCCACTGGTT CTGGGGCCCG
AACCTGGTCG CCAGGGCGCT CTACGGGCGG GCCATCGTGG CCTCGGTGGT GACCAGCCTG
TTCGCGCTGG CGTCGTCGAT CTTCACGATG ATCGTCTACG ACCGCGTGAT CCCCAACAAC
GCCGTCGAGA CGCTCTGGGC GATGCTGTTC GGCGTCGGCA TCGTGTTCCT GTCGGACTTC
GCGATCCGCA ACGTGCGCGG CTATTTCCTC GACATGGCCG GCGGGCGCGC CGACGTCGAG
ATCGCCGACA CCGTGTTCGA CCACGTGCTC GACCTCGACA TGCGCGCCCA GCGCGGCCCC
ACCGGCAGCC TGGCCAGCAT CCTGAAAGAG TACGAGACCA TCCGCGACTT CGCCACCTCG
GCCACGCTGA CCACGCTGAT CGACATCCCG TTCGCCTTGC TGTTCATCGT CGTGCTGTAC
TGGATCGGCG GTCCGATGGC CTGGGTGCCG GTGGTGGCGA TCCCGCTGAT GGTGCTGGCC
GGCCTGCTGC TGCAGCCCAA CCTGAAGCGC CAGTCGCAGA TGAGCCACGA CGACAGCCAG
ACCAAGCAGG CGGTGCTGGT CGAGACCCTG GCCGGGTTGG AGACCATCAA GTCGCTCGGT
GCCGGCGCGG TGATGCGCCG GCGCTGGCAG GACGCCGTGA TCCACCAGGC CCGCATCAGC
ATGAATGCCC GCCTGCTCGC GCAGCTGGCG GGCAACTGGG CCAACCTCGT GATGATGGGC
TCGCAGGTCG CGGTGGTGAC GGTGGGCGTG TACCTGGCGG CCGACGGCCA GGTCGGCTCG
GGCGCGATCG TGGCGGCCAC CATCCTGTGC GGCCGGGCGG TGCAGCCGCT GGCGCAGCTG
TCGCAGCTGC TGATCCGTCT CAACCAGTCG ATGGCCAGCT ACCGCTCGCT GGCGCGCGTG
ATGGCGATGC CGCGCGAGCA CATGCCCGGC CAGCAGACGA TGGCGCACGA CCGCCTGGGC
GGCTCGATCG AGCTGCGCGA GGTCAGCTTC AGGTACCCCG GCAACGACAC GCCGGTGCTC
GACAAGGTCT CGCTGCGCAT CGCCGCCGGC GAGCGGGTGG CCATCATCGG GCGGGTCGGC
TCGGGCAAGA CCACCCTCAT CAAGATGCTG CTCGGCCTGT ACCGGCCCGA CGAAGGCCAC
CTGCTGGTGG GCGGCGTCGA CGTGCGCCAG ATCGACACCG CCGACCTGCG CCGCAACGTC
GGCTCGGTGC TGCAGGACGT CTGGCTGATG TCGGGCTCGG TGCGCGACAA CATCGCCCTC
GGCGCCGAGC GCCCGAGCGA CGACGCCGTG CGCCACGCCG CCGGCCTGGC CGGCTCGCAC
GAGTTCATCT CGCAGCACCC GCAGGGCTAC CAGATGCGGG TCGGCGAAGG CGGCATGGGC
CTGTCGGGCG GCCAGCGCCA GTCGATCGCG ATGGCCCGCG CGCTGATCGG CGACGCGCCG
ATCCTGGTGC TCGACGAGCC CACCAGCGCG ATGGACCCGG CCGCCGAGCG GCAGCTGCTC
GACCGCCTCA AGACCGAGCT GCAAGGCCGC ACCGTGCTGC TGGTGACGCA CAAGCCGTCG
ATGCTGGCGC TGGTCGACAA GGTGATCGTG CTCGACGGCG GCCGGATCGT CGCGGCCGGC
CCGCGCGACC AGATCATGCG CATGCAGTCG CCCGCGGGCA CGCAGAAGGA GGCCGCGTGA
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| Protein sequence | MTAMLHATRT DSPAPASAVV TPLPTPAASP APPVADSLRT CLLFLLEHHG RPLSAAALRA
MVARPDESWQ IDDFVDAIES LGFATRTARA DEPPEPAPNE PLLLIGVDGE ANVLLGRRGN
DRIENWEVYL SATRKVVQLT RAELLARHGG QVVQVRPPQR VAGTDAGAPR GRHGHWFWGP
NLVARALYGR AIVASVVTSL FALASSIFTM IVYDRVIPNN AVETLWAMLF GVGIVFLSDF
AIRNVRGYFL DMAGGRADVE IADTVFDHVL DLDMRAQRGP TGSLASILKE YETIRDFATS
ATLTTLIDIP FALLFIVVLY WIGGPMAWVP VVAIPLMVLA GLLLQPNLKR QSQMSHDDSQ
TKQAVLVETL AGLETIKSLG AGAVMRRRWQ DAVIHQARIS MNARLLAQLA GNWANLVMMG
SQVAVVTVGV YLAADGQVGS GAIVAATILC GRAVQPLAQL SQLLIRLNQS MASYRSLARV
MAMPREHMPG QQTMAHDRLG GSIELREVSF RYPGNDTPVL DKVSLRIAAG ERVAIIGRVG
SGKTTLIKML LGLYRPDEGH LLVGGVDVRQ IDTADLRRNV GSVLQDVWLM SGSVRDNIAL
GAERPSDDAV RHAAGLAGSH EFISQHPQGY QMRVGEGGMG LSGGQRQSIA MARALIGDAP
ILVLDEPTSA MDPAAERQLL DRLKTELQGR TVLLVTHKPS MLALVDKVIV LDGGRIVAAG
PRDQIMRMQS PAGTQKEAA
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