Gene Lcho_2293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2293 
Symbol 
ID6160858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2482930 
End bp2483427 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content71% 
IMG OID641665063 
Product2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
Protein accessionYP_001791324 
Protein GI171058975 
COG category[I] Lipid transport and metabolism 
COG ID[COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
TIGRFAM ID[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCGA CGAAACTGCC GGCCCTTCGC ATCGGCGAGG GCTGGGATAC CCACGCGCTG 
GTACCTGGGC GCGACCTGTG GCTGGGCGGC GTGCGGATCC CGCACACGCT GGGTCTGCTC 
GGCCACTCCG ATGCCGACGC GCTGTTGCAC GCCATCACCG ATGCGGTGCT GGGGGCCGCG 
GGGCTGGGCG ACATCGGCCG CCACTTTCCG GACACCGCAC TCGAGCACAA GGGCGCCGAT 
TCGCATCGGC TGCTGAGCGT TGCGGCGCAG CGTGCTGCCG AGGCCGGCTG GCAGGTCGTC 
AATGTCGATT GCACCGTCGT CGCCCAGGCG CCGCGGATGG CCGCGCACAT TCCGGCGATG 
TGCCAGCGCA TCGCCTCGGC ACTGGCCGTT GCGCCCGATC AGGTCAACGT CAAGGCCAAG 
ACGGCCGAGC GCATGGGGCC GGTCGGCCGC GGCGAGGCGA TCGAGGCGCG CGCGGTCTGC 
CTGCTGATGC GGGGCTGA
 
Protein sequence
MTSTKLPALR IGEGWDTHAL VPGRDLWLGG VRIPHTLGLL GHSDADALLH AITDAVLGAA 
GLGDIGRHFP DTALEHKGAD SHRLLSVAAQ RAAEAGWQVV NVDCTVVAQA PRMAAHIPAM 
CQRIASALAV APDQVNVKAK TAERMGPVGR GEAIEARAVC LLMRG