Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2248 |
Symbol | |
ID | 6163223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2453396 |
End bp | 2455150 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641665018 |
Product | hypothetical protein |
Protein accession | YP_001791279 |
Protein GI | 171058930 |
COG category | [S] Function unknown |
COG ID | [COG4383] Mu-like prophage protein gp29 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCATCGA AGATCCTGGA CCAATACGGC AAGCCGATCG ACCTGGCCGC CATCCGCGAG CCACAGACCG AGCGCGAAGC ATCCGCCACC GGCGGCGCCG CTCGCGTGGG CTGGCTGCAC CGCGAGTTCG ATGCGCACCC GGGCCGCGCG CTCACGCCGG CACGGCTCAA CGCCATCCTG ACGCAGGCCG AGCAAGGCGA CATCACTGCG CAGCTCGAGC TGGCCGACGA CATGGAAGAG CGCGACGGAC AGATCTTCTC GGAGCTCGCC AAGCGCAAGA CCGCCGTGAC CACGCTCGAA TGGGACGTGG AGCCGCCCGA CGACGCCAGC TCGGCCGAGC AGGCAATGGC CGACCAGGTG CGCGACTGGA TCAAGCAGAT CCCGAACTTC GAAGAAGACG TGCTGCTTGA GCTGATGGAC GCGGTGCTCA AGGGCTACAA GCCGATCGAG ATGTGGTGGG AGCTCGACCA GGGCACGCGC CAGCCGCGCT TCGCGCCGCG CCCGCAGCGC TGGCTGTGCA TCGGCGAAGA CCGCAACAGC CTGCGCCTGC GCGACGGCGC CAGCCAGTAC GGCGTGCCGC TGCAGCCCTA CGGCTGGCTG CTGCACGTGC ACAAGAGCCG CAACGGCTAC CTGGCGCGCG GCAGCCTGGC GCGGGTGCTG GCCTGGCCGT TCCTGTTCAA GCACTACGCG GTGCGCGACC TGGCCGAGTT CCTCGAGATC TACGGCCTGC CGATGCGCCT GGGCAAGTAC CCGGCCGGGG CGTCGGACGA CGAGAAGCGC AAGCTGCTGC AGGCGGTGGT CAGCATCGGC CACAACGCCG GCGGCGTGAT CCCGGCCTCG ATGGCGATCG ACTTCCAGAA CGCGGCGCAG GGCAACGAGG CGCCGTTCAA GACGATGTGG GATGGCATGG ACGCCGTGCA GAGCAAGATC ATCTTGGGCC AGACGCTCAC CAGCAGCGAG GGCAAGAGCG GCAGCCAGGC GCTGGGCAAC GTGCACAACG AGGTGCGGCT GGACATCCTG CGCAGCGACG CCAAACGCGT GGCCGCCACG CTGACCAGCC AGCTGATCGC GCCGCTGGTG CTCTTCAACA TCTCGGGCGC TGACCCGCGC CGGCTGCCGC GCTTCTGCAT CGACGTGCCC GATCCCGAAG ACCTGGCGCT CTATGCCGAG GCGCTGCCCA AGCTGGCCGC GGCGGGCATG CGCATCGGGG TGAGCGATCT GCACCGGCGC TTGCGGATCG AAGAGGCCGA TGATGGCGAG GAGGTGCTGA AGGGGCCGCC GGCGCCGACG ATGCCCGGCG CGCCGCCTGC GATCGGTGCG CCAGGTGCGA TCGACCCCGA GGCCGAAGAC TCGGCAGACG ACGAAGACCC CGCCATGCCA CCTGGTGTGA AGCCGCCCGT TGCGAAGCGC ACCCGCGCCA AGAAGGCCCC GCCCGCCGCG GCCGCCGTCA AGCAGGTGGC GCTGGCCGGC ACCACGCCAC CCGCGCCGGC GCCGCGTGAT GCGCTCGACG ACCTGGTCGA CTCCGCGCTG AGTGATTGGC AGCCGGTGAT GGCCGCGCTG GTCGAGCCCT TGATGGCCGA AATCGACAAG GCCCTTGCAT CAGGCGAAAG CCTGCAGGCC TTCCGCGACC GCCTGCCCAA GATCGCCAAG CAGATGGATG ACGCGCCGCT GGCCGAGCGC GTGGCGCGCG CCACGTTCGT GGCCAGGCTG GCGGGCGAGG CGGATCTCGA CCTCAGCGGC GACGAGCTCG TCTGA
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Protein sequence | MASKILDQYG KPIDLAAIRE PQTEREASAT GGAARVGWLH REFDAHPGRA LTPARLNAIL TQAEQGDITA QLELADDMEE RDGQIFSELA KRKTAVTTLE WDVEPPDDAS SAEQAMADQV RDWIKQIPNF EEDVLLELMD AVLKGYKPIE MWWELDQGTR QPRFAPRPQR WLCIGEDRNS LRLRDGASQY GVPLQPYGWL LHVHKSRNGY LARGSLARVL AWPFLFKHYA VRDLAEFLEI YGLPMRLGKY PAGASDDEKR KLLQAVVSIG HNAGGVIPAS MAIDFQNAAQ GNEAPFKTMW DGMDAVQSKI ILGQTLTSSE GKSGSQALGN VHNEVRLDIL RSDAKRVAAT LTSQLIAPLV LFNISGADPR RLPRFCIDVP DPEDLALYAE ALPKLAAAGM RIGVSDLHRR LRIEEADDGE EVLKGPPAPT MPGAPPAIGA PGAIDPEAED SADDEDPAMP PGVKPPVAKR TRAKKAPPAA AAVKQVALAG TTPPAPAPRD ALDDLVDSAL SDWQPVMAAL VEPLMAEIDK ALASGESLQA FRDRLPKIAK QMDDAPLAER VARATFVARL AGEADLDLSG DELV
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