| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2235 |
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| Symbol | |
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| ID | 6163679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2442889 |
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| End bp | 2446230 |
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| Gene Length | 3342 bp |
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| Protein Length | 1113 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665005 |
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| Product | prophage tail length tape measure |
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| Protein accession | YP_001791266 |
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| Protein GI | 171058917 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5281] Phage-related minor tail protein |
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| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGACA TCGGCGCCAA GATCATCATC ACATCGGATG TGACGGGGGC GCTCAAGGGC
CTGCGTGACG TCAAGGACTC GGCCACACAG CTGGGTGCCA CGTCGGCCAA CACCGGCCAG
CAAGGCGCTG CCGCGCTGGA CCGGCAAGCC ACCGCGGCAT CCACCGCTGC AGCGGCCACC
GGCGCGGCCG CCACGCAGGG GGCTGCCGCT GCAACCACGG CGGCAGCCGC CACCACGCAA
GGCGCTTCCG CCACGGCCGC AGCTAGCGCC AAGGCCACCG AGGCCATCGA TCAGCAGGGC
AAGGCTGCAG GCGTGAGCGC GGCGCAGACA GCGGCCGCCA TGCGCACGTT GCCGGCGCAG
TTCACCGACA TCGCCACCAG CCTGGCCGGT GGGCAAAGCC CGCTGATGGT GCTGCTGCAG
CAGGGCGGGC AGATCAAGGA CTCGTTCGGC GGCATCGGCC CCGCGGCCAG GGCGTTGGGC
GGCTACGTGT ACGAGCTGAT CGGCCCGTTC ACGCTGACCG CCGGTGCTGC TGCAGCACTG
GCCCTGGCCT ACGCGCAGGG TAGCCGCGAG GCTGATGCCT ACTCGACGGC GCTGATCCTC
AACGGCAACG TCGCAGGCAC CACGGCGGGC CGGTTGCAGG ACGCCGCCAG CCGCATCGAC
GGCGTGGTGG GCACGCAGGC CGCGGCAGCC GAGGCGCTGG CACAGTTCGC GGGCGCGGCC
AACATCTCAC CTGCTGGCCT GGAGCGGTTC GCCACGGCGG CCATCCAGAT GGAGCGCGCG
GTCGGCACAT CGGTGGCCGA GACGGTCAAG CAGTTCAGCG CGCTGGGCCA GGCGCCGCTG
GCGGAGTCGA TCAAGCTCAA CAGCCAGATC AACTACCTGA CGGTGTCGGT CTACCAGCAG
ATTCGCGCGC TGACCGAGGC GGGTCGCACC ACCGAAGCTG CAGCCCTGGC GCAGCAGGCC
TACGCCGATG CCATCGAATC CCGGGCAGGC CAGATCATCG AGCGGCTGGG CTCCATTGAG
CGGGGATGGT CGGGTGTCAA GGACATCGCC AAGGAAGCGT GGGACGCGAT GCTCAACGTC
GGCCGCGCCG ACACGCTGAC CGACACCTTG ACCGAGGCCG AGGCTCGGCT GACGGAGCTG
CAGGGCAAGA ACCCGTTCAA AAATGCCGGC CTGGTCGAGG CGACGCAGGC CACGCTTGGC
GGCGATGACT TCCTGGTGCG CCGGATCCGC GAGCAGCAGG GGCTCGTGGC CACGCTGAAG
GAATCGATCC AGCTCGAGGG CCGCGCCGCC ACACAGCAGC GCGAGGCCGC AACCAACACT
CAGGCGGTGA TCGGTGCCCA GGGCTACGTC GATCGGCTGC ACCAGCAGAC CAACGCGCAA
GCCGGGTTGA CCAAGGCCCT GGACGAATAC CGGCGCAATG CCGATCTGCT GGCCCGTGCC
GGCAGCCCGA TCGATGCGGC CCAGCAGGCG AAGGACCTGG ACGCACTGCG TGCCAAGTAC
GCCGACAAGA GCGGCCCGGC GGCCTATGAC GCCGCCCTGA ACCTGCAGCG GGCCCGCGAC
CAGGCAGCGG GCAATGAGCG CCTGCGCGGC ATCGAGGCGC AGGAGCAGCA GCTCGCGGTG
GTGCGCGCGC AAGGGCTGCT GAGCGTCGAC GAATTCGAGC GGCAGCGCCT GGACATCCAG
CGCCAAAAGC TGCGTGAGCG CGAAGGCCTG CTGCAAGAAG AGATCGAGCT CGAGCAGCAG
CGCCGGCCGG CCGATGCCGC GGGCCGCGTG GCGCAGCAGG CCAAGGTGGT CGGGCTGCAG
GATCAGCTCT CGGGTGTACG CGCCGAGCAG AAAGCGCTGC CGCTGGTGGC TCAGGCCGGC
ACCGAGCAGC GGGCCCTGGA GGATTCGCGC CAGCGCTCGC AGGCCTGGGC GCAAGCCTGG
ACCACCGCGA ACAACCAGGT CACCGAGCTT GCCGAGCAGA ACGCCCGCTC ACGCGCCGCA
CTGATCACCG ACCCGGTGGC ACGCGCCGGA GCCGAGCTCG ACATGCAGGT GGCCGCGATC
CGCAAGCAGG CCGACCAGGT CACGAAGGAC CTGCAGCTCA CGCTCGGCCT GACGGTCGAC
CCGGCGCAGC GCAAGTTGCT GCAGAGCGAG ATCACCGCCA TCGGCGAGCA GTCGGCCGAG
GCCATCGTGC TGGCCAATGC GGGCATGGCC GAGCGCATGA AGCCGGGCTG GCAGCAGATG
GTCGACGGCT GGAGCGATGC CACCCGCCTG ATGCGCGAGA GCCACGACGA GCTGATGCAG
GGCGTGGTGC GCAATGGCGA AGACGCGTTC GTGGAGTTCG CGCGCACCGG CAAGCTCAAC
ATCAAGAGCC TGGTCGACGA TGCGCTGGAG CAGATGCTGC GCCTCGAATT CCGCAAGGCG
CTGGGGGGCG ATACCGGCAA GTCGGCGCTG GGCGCGATCT CGGAGTTTCT GGGGGGCAAG
CCATCTGCCG GGAAGCCGGG CAAGTCTGAG GATGCGGACA CGCTCGACAG CTTCAACAGC
TGGGAGCGCG ACCTTGACGA GATGTCGGGC ACGGCCGCTG CGGCGGGTGA ATCGATGCAG
CGATCGGCTG TGTCGACCGA CCTGTTGAGC GGCCAGTTCG CGGACTTGAC CAAAGGCCTG
GGCAGCTTCG GCAGCGTGCT GATGAGCGCC GCCCAGGCCG TTGGGCTGCT GGCCAGCAGC
AGCAGCGGCG GGTCGTCGGG CGCCGGCTTT CTGGGCATGC TGGCCAGCCT GGCCAGCAGC
GGCGGCAACA GCGCCGCGCC CACGATCGCC GGCAATGCCT CGATCCCGAT CGACTTGGCC
GCCACCGGCC GGGCCTACCG GGCCGGCGGC GCAGTGGCAT TTGCCAGCGG GGGATCGTTC
ACCAACAGCG TCGTCACGAG CGACACCTAC TTCAAGTTCA AGAGCGGTGG CCAGACCCGA
CTGGGGCTCA TGGGCGAGGC GGGCGACGAG GCCATCATGC CGCTGCGCCG CTCGGGCGGC
GGCCACCAGG TCGATGCGGT CGATCGCACC GGCAAGCTCG TGGGCGGCAT GCAGCTGCGC
CGCGGCCCGG GTGGCCGGCT GGCGGTGCAG GCGTTTGCCA CCGGCGGCTC GTTCGGGGGT
GGGGCACGCC TGGCCGAAAC CATCGGCCGC GCCAGCGGCA GCGCGGCCGG CGCAGACGCG
GGCCTCGCAC TCACCGTCGC CCCGGTCATC AACATCGACG CCCGCACCGA CAAGACGCAG
GTGATGCAGC TGGTTCAGCA GGGCGTGCAG CAGGCGGTCA ACCAGGCGGT GTCGAAGGTG
GCCGATCAGC GCGCCCGCGG CAACCGCGCC TTCAGCTCCT GA
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| Protein sequence | MADIGAKIII TSDVTGALKG LRDVKDSATQ LGATSANTGQ QGAAALDRQA TAASTAAAAT
GAAATQGAAA ATTAAAATTQ GASATAAASA KATEAIDQQG KAAGVSAAQT AAAMRTLPAQ
FTDIATSLAG GQSPLMVLLQ QGGQIKDSFG GIGPAARALG GYVYELIGPF TLTAGAAAAL
ALAYAQGSRE ADAYSTALIL NGNVAGTTAG RLQDAASRID GVVGTQAAAA EALAQFAGAA
NISPAGLERF ATAAIQMERA VGTSVAETVK QFSALGQAPL AESIKLNSQI NYLTVSVYQQ
IRALTEAGRT TEAAALAQQA YADAIESRAG QIIERLGSIE RGWSGVKDIA KEAWDAMLNV
GRADTLTDTL TEAEARLTEL QGKNPFKNAG LVEATQATLG GDDFLVRRIR EQQGLVATLK
ESIQLEGRAA TQQREAATNT QAVIGAQGYV DRLHQQTNAQ AGLTKALDEY RRNADLLARA
GSPIDAAQQA KDLDALRAKY ADKSGPAAYD AALNLQRARD QAAGNERLRG IEAQEQQLAV
VRAQGLLSVD EFERQRLDIQ RQKLREREGL LQEEIELEQQ RRPADAAGRV AQQAKVVGLQ
DQLSGVRAEQ KALPLVAQAG TEQRALEDSR QRSQAWAQAW TTANNQVTEL AEQNARSRAA
LITDPVARAG AELDMQVAAI RKQADQVTKD LQLTLGLTVD PAQRKLLQSE ITAIGEQSAE
AIVLANAGMA ERMKPGWQQM VDGWSDATRL MRESHDELMQ GVVRNGEDAF VEFARTGKLN
IKSLVDDALE QMLRLEFRKA LGGDTGKSAL GAISEFLGGK PSAGKPGKSE DADTLDSFNS
WERDLDEMSG TAAAAGESMQ RSAVSTDLLS GQFADLTKGL GSFGSVLMSA AQAVGLLASS
SSGGSSGAGF LGMLASLASS GGNSAAPTIA GNASIPIDLA ATGRAYRAGG AVAFASGGSF
TNSVVTSDTY FKFKSGGQTR LGLMGEAGDE AIMPLRRSGG GHQVDAVDRT GKLVGGMQLR
RGPGGRLAVQ AFATGGSFGG GARLAETIGR ASGSAAGADA GLALTVAPVI NIDARTDKTQ
VMQLVQQGVQ QAVNQAVSKV ADQRARGNRA FSS
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