| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2232 |
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| Symbol | |
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| ID | 6163676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2435945 |
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| End bp | 2441692 |
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| Gene Length | 5748 bp |
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| Protein Length | 1915 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665002 |
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| Product | Phage-related protein tail component-like protein |
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| Protein accession | YP_001791263 |
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| Protein GI | 171058914 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4733] Phage-related protein, tail component |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTCA TCAGCAACTT CTTCACCGCT GCGGTCGCGT TCGTTGCGTC GGGCTTCAAT
CCCTGGGTGG CTGCGGCGGC ATTCGCGGCC GGAACCTACA ACGACATGGA CGTGCGCCGC
CGGCAGCGCA ACGCCCGCAA GGCCTACAAC GACTCGCTCA AGGACCGCTA CGCGATGGTC
AAGAGCGCGA CCGAGGCGCG CAAGGTCGTC TACGGCCGGG CCCGGGTGTC CGGCCCGATC
GTGTTTGCGC ACTCGTCGGG CGACAAGAAG CAGTACTTGC ACCTGGTCGT CGCGCTGGCC
GGGCATCAGA TCGATGCCGT CGAGACGATC TACCTCAACG ACGTTGCGCT GCCGGCGCCG
AACGCGAGCA CCGGCTTCAT CGAGTCGGGG GAGTACTTCT CGGGCCGGCA GGAAACCCGC
AGCGCCGGCG CGGCCGTATC GGCTGGCGGG GCGTTCTCGA TCACGCTGCC GCTGGGCCCG
GGCGAGTCAC TGGTCAGCGT GGTCGGGATG ACGCGGCGCA TGGCCTACGG CGCCACCGTC
CAGTTCGCAG CCCAGTCCTA CACGCTGTCG GGCAACGTGG TCAGCGGGGT TGCTGGGGGT
GGGAACGGCT CGCTGAGTGT CACGGGTGTG TCGGTGACCT ACACCATCGC CACCGGCACC
TCGCGGGTGC GGGTGCGCTC GGTGCTGGGC ACGGCCACCC AGTCGGCGTT CGCAGAGCTG
GTCGCCGAGA GCGGCGGCAA GTGGACTGCG GCGCACCAGC TCAAGGGCAT CGCGGCGATC
TATCTGCGCC TCGAGTACGA CCAGGACATC TTCGGGCAGA CCGGCTTGCC CAACGTCAGC
GCCGTCGTGC GCGGCAAGCC GATTCGTGAC CCCCGCACCG GCCTGACGGT CTGGACCGAC
AACGCCGCGC TCTGCCTGGC CGACTACCTG CGCGACGCGA CCTACGGCAT GGGCGCCAGT
GCTGCCCAGG TGCCCGACGC CGAGCTGATC GCCGCGGCCA ACATCTGCGA CGAGCTGGTG
ACGCTCACCG CCTCGCCGTT GACCACCGAG CCCCGCTACA CCTGCAACGG CGTGCTCGAC
AGCGGCGCCA CCGCCCGCGA CAACCTCGAC AAGCTGACCG AGTCGATGGC CGGATCACTG
GTCTGGACCC AAGGCCGCTG GCTCATGCGC GCCGGCGCCC ATCGGGCCGC GGTGCTGACG
CTGACCGAAG ACATGCTCGC CGACAAGGCC CCCGTCATCA GCCCGTTCGC GTCCCGCGCC
AACCTGGTCA ACCGGATCGT GCCGACCTAC GCCGAGAGCG CCAAGGCCTA CACCGAGATG
CAGGCGCCGG CCGTCAGCAA CGCGACCTAC CTGGCCGACG ATGGCGGCAT CGACCTGCCG
CAGGAGATCA CCTACGACCT GGTCACCGGC GCGCTGCGGG CCCAGCGCCT GGCAAAGATC
GAGCTGGAGC GCTCCCGCCA GGCTCTCACA GTGCAAATCA GTTGCAACCT GCGCGGCTAT
GACCTGAGCC CCAGCGACAC GGTTGCGCTG ACGCTCGTGC GCTACGGGTG GTCGGGCAAG
CTGTTCGAGG TGATGAGTCG CACGCTCGAC CCGGCCACGA TGCAGGTCGA TCTGACGCTG
CGCGAGACGG CGGCGGCGGT GTGGGACTGG GCGCTCGGCG ACGCCACCAC GGTCGACTTG
ACGCCCAACA CGTCGCTGCC CAATCCGCTG GTGCGGCCTG CTGCGCTGAC CGGCCTGTCG
GCCGCCAGCG GAACGACGCA CCTGCAGTTG GGCGCTGACG GCACGGTCAT CACCCGCGCG
CTGCTGTCGT GGACGCAGAG CACCGAGGCG TTCGTGGCCG AGGGCGGACA CGTGCAGGTG
CAATGGCGTA TCGCCGACGC AGCGACCTGG CAGGACGCTC CGCACGTACC GGGGGCAGCG
ACCTCGACCT ACCTCGCGCC GCTGCCGGAT GCTGGCGTGA TCTACATCCA GGCGCGTGCC
GTGAACAGCT TGGGGCGGGC GAGCGACTGG GTGGTGATCA GCCATGTCGT CGTCGGCAAG
AGCGCCGTGC CCGTCAACGT GGCGGGGCTG ACTGCCGCTG TGGTGCCGGG CGGCGTCAAG
ATCACGTGGA CGGGCAGCGA CGAGCTCGAC TACGCCAGCA CCCAGCTGCG CATCGGCACC
AGCTGGGCCG CGGGCACGCT GTTGGCCGAC CTCAAGGGCA ACACCTACAC CTGGCCGTGG
CCAGCGCAGG GCAGCTACAC GATCCGGGCG CGCCACTTCG ACAGCAGCGG CAACGTCAGC
GCCGCTGACG CATCGGTGGT GGCGGTGGTC GACGCCAGTG CGCTGGTGCA GTGGGGCAAC
ATCACCGGCC AGCCGCAGGC CGGGCGCAAC CTTGTGGACA CGAGCACATG GGTTGCCGGG
CAGGCGGATG CCACGATGCC GTGGCCGCGC ATCACCAACA CCGCGACCGA GAACTCGATC
GTGCTGGGCA TTGGTCCGCG CGGAGTCGGG TCTCTGCTTT GGCGCGCGGT GGCGTCGGGA
GACAGCGCAA CAGCGGGCAA CGGTGATGGC GGCTGGAGCG GCAGCTGGTC ACCCGGCGCG
TTCATCGTGC CCGACACGAC CAAGACCTAT CGCGTCGTCG TGCCGTGCAA GCGGGTGGGG
TCGGGCGGCA ACGGCACCAT CTATGTGGGC CCGGCACCAG GGTTTCCCGC TGTCGCCCAG
ATTGCAGACA TCAACACCAC GACCGGCAAC ACGAACCCGT ATTTCGACGG GCAGCCGATT
TCGACTGCGC CGGCCGACGT GTGGCTGCTG GTCGTGGGCT ATGTCTACCC CGCGGGCAGC
TCAGGCATGA CCAACGCCGG CGCAGGCACC TATCGATGCG ACACCGGCGC CCTGCTCGGT
GCTGGGACCA ATTACTGCTG GATGGCCGAT GCTGACACGT TCGGCGTGCG GGCCTTTCAG
TACGGCACGA CCGTGGTCGG CGCCGAGGTG CAGTTCGGCG AGCCGCAGAT CCACATCGCC
GACGGCACCG AACCGAGCAT CCTGCAGCTC ATGGGCGATG GTGCATGGCG CGGCCTCACC
GCCGTGCTCA GCAACGACAG CCACACCGTG CCGGCTGACA GTGCCGGCGT GGTCGGCACG
TTCGCCGGCG CTGCCAGCAC GATCACCGTA TTGCAGGCCG GCGCCGATGC CACGGCAAGC
TGGGCGATCA GCAAGGTCGA CACCAGCTGC ACCAGCACGC TCGCCGGCAC CACCGTGACC
GTGAGCGCGC TGGCTGCTGA CGTCGGGTAT GTGGACATCA CTGCTACCCG ATCGGGCTAC
GCAACGCTGA CGCGGCGCTT CACGATCAGC AAGGTGCGCG CCGGTGCAGC CGGCGCCACG
GGGGCAACGG GTTCGACAGG GGCCACCGGC GCCACGGGAG CAACCGGTGC GGCGGCCACC
GCCTACTGGA TCGAGCGCAG CGTGGGCGCC ATCGCCCGCA GCGTGGCGGG GGTCTACACA
CCCGCCAGCG TCACGTTCAC CGCTCGATCG GCCACCGGCG CCGCGGCACC TGCCGCCTAC
GCCGGGCGGT TCGTGATCGC AGAGACCACC GACGGCACCA CGTTCACCAC CGTCTACACC
AGCGCCGCCA ACGAGAGCAG CCGCACCCAG ACGCCCGCGG CGGGCATCAA GGCCCTGCGG
GTGACGCTCT ACCTGGCCGG CGGCACCACG ACCCAGCTCG ATCAGGAGAT CGTGCCTGTC
GTCGTGGATG GCGCGACGGG CGCCACAGGT TCGGCCGGTG CGACAGGCGC CACCGGCCCG
GCCGGCGCCA ACGCGGTCAG CCTGGTGCTC AGCAACGAGG CGCACGCCGT GCCCGCCGAC
AGCGCTGGCA CGGTCACGAG CTTCGGCGGC GCGACGTCGA CGGCGTTTGT CTACGAGGGC
GGCACCGGCG GGGTCGGCTG GACGATCAGC AAGGTGTTCA CGAGCTGTGC GGGCACGGCC
GGCGATGCGG CCTCGGTGGT CAACATCAGC AGCCTGAGTG CCGACGTCGG CTATGTGGAC
TTCACGGCCA GCAAGAGCGG CTTCAGCGGC GTGACCAAGC GCTTCACGAT CAGCAAGGTG
CGCGCCGGTG CGGCCGGCGC CACAGGGGCA ACGGGTTCGA CAGGGGCCAC CGGCGCCACG
GGGGCAGCAG GCGCAGCGGC CACCGCCTAC TGGCTCTCCC GCAGCGCTGG CGCCATCAAG
CGCAGCGTGT CGGGTGCCTA CACCCCGGCC AGCCTCACGG TCACGGCCTA CAGCGCCACC
GGCACCGCCG CGCCGGCCGC CTACGCCGGC CGCTTTGTGA TCGCCCAGAC CCTCGACGGC
TCGACCTACA CCGACGTCTA CACCAGCGCC GCGAACGAAA GCAGCCGGAG CCAGACGCCG
GCGGCCGGAG TCGTGGCACT GCGACTGCGC CTCTACCTGG CCGGCGGCAC AACGACGCTG
CTCGACGAGG AGATCGTGCC GGTGGTCGAC GATGGCAGCG GCGTCAACAT GGTCGATACG
GGGTGGTGGT CGCCCAGTGC CACGTTCGCG TGGGCAAAGC GCGAGCACGC GCCCACGCCG
GAGACCGCCA TCATCTGGGC GCCAGGGGTC AAGGGGCAGA GCGTGCCCGT CGTCCAGTGC
GTGGCAGACA GCTACAACAA GGTCTACACG CCCAGCAACG TCGCTGCGAC GTCGTTCTGG
AATGCGTTCT GGTTCCCCGC CGAAACCCAG GGAACCGCTG TGGCTCCGAC GGCTGCGCTT
GATGCCGCAG GCGGTTACAC CACGACTGCG GGCGTCTACA GCGGGCCTGC GTACAAGATC
ACCAAAACTG CCACTGCGGT GCAGTCCAGC GGCATGGGCA ACAAGGCCTT CGCGGTGACC
CCTGGCCAGG TGCTGCGTGT GAGCGTGCGC GTGCGCGGCG ATGCCGCCTC GGCGGCGGGC
TTGTACGTGC TGATCAACCA GGCCACGACG ATGCCTGCGT CCGGCGCCGT GACGTTCAGC
AATCGCGCCA GCGTCGTCAA CATCCTGGCC AATGGCCCGG CGACATCGAC CTACACCCAG
TACGCGATTA CGGCATACAC GGTGCCCGCG GGTGTTGTCG CGATCTCGGT GTCGGTGTTT
TCGTGGACGA ACGGCCCACT GAGCCTGTGG ATCGACGACC CCGTGATCAA TCTGGCCAGC
GCCACCGATA ACGCGGTCGG GCCTCGCGAA AACAACGATG GGGGGTTCGA GGCGTCAGCT
GCAAATGCCT TTGTCCCAGA CCCGGCCAAG ACGTACCGAT TTCTGGTGCC GATCTGGCGC
GAAACCGCCG GGCTCTACGC GATCCAGTAC TTCGGGTCCG AGAACAACAA GGTCTGCAAC
CTCAACACCA GCACGCTCAA CGGCAACCCC TATTTCACGA CCACCAGCAC TCTGACGGCA
GGCCGCTGGT ATCTGGCGGT CGGGTATGTC TACCCGGCCG GTTCGACGGG CATGACGCAC
ACCGATGCCG GTGTGTGGGA CACGACCACC GGAGCAAAAC TCCAAGGTGG GGCGAACTAC
TGCTGGCCTG CTGCGGCGTC GTCGTGCGGG GTACGGGCGT TTCAGTTTGC GGCCGACAAC
GGATCAGAGA CGCGGTTCGG CCAGCCGATG GTGCACGTTG TGGATGGCAC CGAGCCGCCG
CTGGGGGCGT GGCTGGCGGT CACGACGGCG GACATTGCGC CTGATTCCGT CACGAGATTC
GTCGAGTTCT ACGACGCCGC CGGCATCGTC AAATCAAATG CGGGGTGA
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| Protein sequence | MSFISNFFTA AVAFVASGFN PWVAAAAFAA GTYNDMDVRR RQRNARKAYN DSLKDRYAMV
KSATEARKVV YGRARVSGPI VFAHSSGDKK QYLHLVVALA GHQIDAVETI YLNDVALPAP
NASTGFIESG EYFSGRQETR SAGAAVSAGG AFSITLPLGP GESLVSVVGM TRRMAYGATV
QFAAQSYTLS GNVVSGVAGG GNGSLSVTGV SVTYTIATGT SRVRVRSVLG TATQSAFAEL
VAESGGKWTA AHQLKGIAAI YLRLEYDQDI FGQTGLPNVS AVVRGKPIRD PRTGLTVWTD
NAALCLADYL RDATYGMGAS AAQVPDAELI AAANICDELV TLTASPLTTE PRYTCNGVLD
SGATARDNLD KLTESMAGSL VWTQGRWLMR AGAHRAAVLT LTEDMLADKA PVISPFASRA
NLVNRIVPTY AESAKAYTEM QAPAVSNATY LADDGGIDLP QEITYDLVTG ALRAQRLAKI
ELERSRQALT VQISCNLRGY DLSPSDTVAL TLVRYGWSGK LFEVMSRTLD PATMQVDLTL
RETAAAVWDW ALGDATTVDL TPNTSLPNPL VRPAALTGLS AASGTTHLQL GADGTVITRA
LLSWTQSTEA FVAEGGHVQV QWRIADAATW QDAPHVPGAA TSTYLAPLPD AGVIYIQARA
VNSLGRASDW VVISHVVVGK SAVPVNVAGL TAAVVPGGVK ITWTGSDELD YASTQLRIGT
SWAAGTLLAD LKGNTYTWPW PAQGSYTIRA RHFDSSGNVS AADASVVAVV DASALVQWGN
ITGQPQAGRN LVDTSTWVAG QADATMPWPR ITNTATENSI VLGIGPRGVG SLLWRAVASG
DSATAGNGDG GWSGSWSPGA FIVPDTTKTY RVVVPCKRVG SGGNGTIYVG PAPGFPAVAQ
IADINTTTGN TNPYFDGQPI STAPADVWLL VVGYVYPAGS SGMTNAGAGT YRCDTGALLG
AGTNYCWMAD ADTFGVRAFQ YGTTVVGAEV QFGEPQIHIA DGTEPSILQL MGDGAWRGLT
AVLSNDSHTV PADSAGVVGT FAGAASTITV LQAGADATAS WAISKVDTSC TSTLAGTTVT
VSALAADVGY VDITATRSGY ATLTRRFTIS KVRAGAAGAT GATGSTGATG ATGATGAAAT
AYWIERSVGA IARSVAGVYT PASVTFTARS ATGAAAPAAY AGRFVIAETT DGTTFTTVYT
SAANESSRTQ TPAAGIKALR VTLYLAGGTT TQLDQEIVPV VVDGATGATG SAGATGATGP
AGANAVSLVL SNEAHAVPAD SAGTVTSFGG ATSTAFVYEG GTGGVGWTIS KVFTSCAGTA
GDAASVVNIS SLSADVGYVD FTASKSGFSG VTKRFTISKV RAGAAGATGA TGSTGATGAT
GAAGAAATAY WLSRSAGAIK RSVSGAYTPA SLTVTAYSAT GTAAPAAYAG RFVIAQTLDG
STYTDVYTSA ANESSRSQTP AAGVVALRLR LYLAGGTTTL LDEEIVPVVD DGSGVNMVDT
GWWSPSATFA WAKREHAPTP ETAIIWAPGV KGQSVPVVQC VADSYNKVYT PSNVAATSFW
NAFWFPAETQ GTAVAPTAAL DAAGGYTTTA GVYSGPAYKI TKTATAVQSS GMGNKAFAVT
PGQVLRVSVR VRGDAASAAG LYVLINQATT MPASGAVTFS NRASVVNILA NGPATSTYTQ
YAITAYTVPA GVVAISVSVF SWTNGPLSLW IDDPVINLAS ATDNAVGPRE NNDGGFEASA
ANAFVPDPAK TYRFLVPIWR ETAGLYAIQY FGSENNKVCN LNTSTLNGNP YFTTTSTLTA
GRWYLAVGYV YPAGSTGMTH TDAGVWDTTT GAKLQGGANY CWPAAASSCG VRAFQFAADN
GSETRFGQPM VHVVDGTEPP LGAWLAVTTA DIAPDSVTRF VEFYDAAGIV KSNAG
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