| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2220 |
|---|
| Symbol | |
|---|
| ID | 6160668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2422705 |
|---|
| End bp | 2423655 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641664990 |
|---|
| Product | ribokinase-like domain-containing protein |
|---|
| Protein accession | YP_001791251 |
|---|
| Protein GI | 171058902 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.101084 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAA CCCAGCCTGT TGTTGTGTGC GGCGAATCGC TGCTCGATGT GTTCGAAGAC
GGCGCCACGC CCACCGGGCT GCGGCTCGAC GCGGTGGTGG GCGGCTCGCC GCTCAATGTC
GCGATGGGCC TTGCGCGGCT GGCTCAGCCG GCCTGGTTCC TGGGCGCCGT GTCGCGCGAT
TTCCTGGGCG AGCGCATCGA ACGCAGCATC AGCGAGGAGA ACATCCACAA GGGCGCACTC
GTGCGCTGCG ATGCACCGAC CACCCTCAGC CTGGTGGGCG TCGACGCCCA GGGGGTGCCG
AGCTATCGCT TCTACGGTCA CGGCGGCGCC GACCGCCAGT TGCTGCCGGA GCACCTGGCG
CTGCTGCCGA CCGAGGTGGC GGCGTTCCAC TTCGGCTCGT ACTGCTGCGT GGTCGAGCCC
ATCGGCAGCA CGATCCGCCA ACTGGTCGAC GACCGTCGCG CGACCAGCGT GATCTCCTAC
GACCCCAACG TGCGCCTGAA CGTGCAGCCG TCACTGGAGG TCTGGCGCGA GATGGTCGAG
TGGATGGCGC AGCGCGCCCA CCTGCTCAAG CTCAGCGACG AGGATTTCGA GCGCCTCTAT
CCCGGCCAGG AGCCGCAGGA TCTGGCGCGC GGCTGGCTCG CGGCCGGCGT CAAGCTGGTG
ATGATGACGT GCGGCGGCGA TGGCGCGCTG GTCTGGTCGG CCGCCGGCCA CGTGAGCGTC
AGCGCGCCCA AGGTCAAGGT GCAGGACACC GTGGGCGCGG GCGATACCTT CCAGGCCGCC
ACGCTGACCG CGCTGGCCGA GATCGGCAAG CTCACGCCGG GCGCGATCGG CACGCTCAGC
CTCGACGAAA TGCAGCGCGT GGCCAGCTTT GCCGCCAATG CGGCAGCGAT CACCTGCACC
CGCCGCGGTC CGGATCTGCC GCGCCGCAAC GAGCTTCCCG CCAGCGTCTG A
|
|---|
| Protein sequence | MNQTQPVVVC GESLLDVFED GATPTGLRLD AVVGGSPLNV AMGLARLAQP AWFLGAVSRD
FLGERIERSI SEENIHKGAL VRCDAPTTLS LVGVDAQGVP SYRFYGHGGA DRQLLPEHLA
LLPTEVAAFH FGSYCCVVEP IGSTIRQLVD DRRATSVISY DPNVRLNVQP SLEVWREMVE
WMAQRAHLLK LSDEDFERLY PGQEPQDLAR GWLAAGVKLV MMTCGGDGAL VWSAAGHVSV
SAPKVKVQDT VGAGDTFQAA TLTALAEIGK LTPGAIGTLS LDEMQRVASF AANAAAITCT
RRGPDLPRRN ELPASV
|
|---|
| |