| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2214 |
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| Symbol | |
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| ID | 6160979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2415537 |
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| End bp | 2417660 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664983 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001791245 |
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| Protein GI | 171058896 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.2532 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCA CCGCTGCCAC CCCGATGTCC ACCTTCAAGC CCTTCCCGCG CTGGGACGAT
GCGCGTGCCG CCGCGCTCGA CGAACCCGGC CAGCTGCTCT ATCGCAGCAA CCTGCTGGGG
TCGGACCTGC GCATCACCAA CTACGGCGGC GGCAACACCT CGGCCAAGAT CTGGCAGCGC
GACCCGCTGA CCGGCGAGCA GGTCGAGGTG CTGTGGGTCA AGGGCTCGGG CGGCGACGTC
GGCTCGATGA AGCTCGACGG CTTCTCGACC CTCTACATGG ACAAGCTGCG CGCCCTCAAG
GGCCTGTACC GCGGGCTCGA GAACGAAGAC GAGATGGTCG GCTACCTGCC GCACTGCACC
TTCAACCTCA ACGGCCGCGC CGCCTCGATC GACACGCCGC TGCACTCGTC GCTGCCCTAT
ACGCACGTCG ACCACATGCA TCCCGATGCG GTGATCGCGA TCGCGGCGAT GGCCAACTCA
CAGGTCATCA CCAGGCAGGT GTTCGAAGGC ACCGTCGGCT GGATGCCCTG GCTGCGCCCG
GGCTACGAAC TGGGCCAGCA GCTCGCCGCC TGCAACGCCG CCCACCCCGG CCTGCGCGGC
ATCGTGCTCG GCGGCCACGG CCTGTTCAGC TGGGGCGACA CGGCCAAGAG CTGCTACGAG
AACACCGTCG ACCTGATCGA ACGCGCGCAG ACCTGGCTGG CGCAGGAACG CGCCGCACGC
AAGGTGCAGG TGTTCGGCGG CACCCGCTTC GAGACGCTGG CCGCTGACGA CAGCCAGGCG
ACCTTGGCCC GCGTGCTCCC GGTGCTGCGC GGCTTGTCGG CCGAAGGCGC GCCGAAGCTC
TTGCACCTCA ATACGTCACC GGAAGTGCTG GAGTTCGTCA ACTCCGCCGA TCTGGAGCCG
CTGGCCGGGC TCGGCACCTC GTGCCCGGAT CACTTCCTGC GCACCAAGAT CCGCCCACTG
ATCGTGCCCG AGGCGGTCTA CCGCCTGACC GGCGCGCCAC TCAAGGCCGC GCTGCAGGAC
CTGCTGGCCG CCTACCGCGC CGAATACGCC GCCTACTACG AGCGCTGCAA GCGCGCCAAC
AGCCCGGCGC TGCGCGACCC GAATCCGGTC GTGATCCTGC TGCCGCGCAT CGGCATGGTG
ACGATCGCGA AAGACAAGGC CACCGCCCGC ATCGCCGGCG AGTTCTACGT CAACGCGATC
AACGTGATGC GCGAAGCCAA TGCCGTCGAC AAATACGTCG GCCTGCCCGA GCAGGAAGCC
TTCGACATCG AATACTGGCT GCTCGAAGAA GCCAAGCTGC AGCGCATGCC CCGCCCGAAG
CCCTTGGTCG GCAAGGTGGC GCTGGTGACC GGCGGTGCCG GTGGCATCGG CCAGGCGATC
GCCAAGCGCA TGCTGGCCGA AGGCGCCTGC GTCGTGCTGG CCGACATCGA CCAGGAGGCG
CTGGATTCGG TCGGTGCCGA CCTGGCCAAG GCGCATGGCC GCGACCACGT GCGCGGCGTG
CGCTGCGACG TGACGAGCGA GGCCAGCGTG ATCGCCGCCT TCGACCGCGC AGCCGTCGAG
TTCGGCGGCG TCGACATCCT GGTCAGCAAC GCCGGCATCG CCTCGGCCGC GCCGATCGAC
GAGACCACGC TCGAACTCTG GAACCGCAAC CAGAGCATCC TCGCCACCGG CTACTTCCTG
GTCGCCCGCG AAGCCTTCAA GCAGATGAAG GCCCAAGGCA CCGGCGGCAG CATGATCATG
ATCGCCAGCA AGAACGGCAT GGTGGCGAGC AATCAGGCGA CCGCCTACTG CGCCGCCAAG
GCGGCCGAGA TCCAGCTCAG CCGCAGCTTC GCGCTCGAAG GCGCGCCGCT GGGCATCCGC
AGCAACGTGG TCAACCCCGA CGCCGTGATC CGCGGCTCGA AGATCTGGAC CGGCAAGTGG
AGCGAGGAGC GCGCCGCCGC CAACAAGATC GACGAGGGCG ACCTCGAAGC CTTCTACCGC
GACCGCTCGA TGCTCAAGCG CAGCGTCTTC CCCGAAGACA TCGCCGAAGC GACCTACTTC
TTTGCCGCCG AACACCTGAG CGCGAAGTCC ACCGGCAACA TCCTCAACGT CGATGCGGGA
AATCTCGCCG CGTTCACCCG TTGA
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| Protein sequence | MNTTAATPMS TFKPFPRWDD ARAAALDEPG QLLYRSNLLG SDLRITNYGG GNTSAKIWQR
DPLTGEQVEV LWVKGSGGDV GSMKLDGFST LYMDKLRALK GLYRGLENED EMVGYLPHCT
FNLNGRAASI DTPLHSSLPY THVDHMHPDA VIAIAAMANS QVITRQVFEG TVGWMPWLRP
GYELGQQLAA CNAAHPGLRG IVLGGHGLFS WGDTAKSCYE NTVDLIERAQ TWLAQERAAR
KVQVFGGTRF ETLAADDSQA TLARVLPVLR GLSAEGAPKL LHLNTSPEVL EFVNSADLEP
LAGLGTSCPD HFLRTKIRPL IVPEAVYRLT GAPLKAALQD LLAAYRAEYA AYYERCKRAN
SPALRDPNPV VILLPRIGMV TIAKDKATAR IAGEFYVNAI NVMREANAVD KYVGLPEQEA
FDIEYWLLEE AKLQRMPRPK PLVGKVALVT GGAGGIGQAI AKRMLAEGAC VVLADIDQEA
LDSVGADLAK AHGRDHVRGV RCDVTSEASV IAAFDRAAVE FGGVDILVSN AGIASAAPID
ETTLELWNRN QSILATGYFL VAREAFKQMK AQGTGGSMIM IASKNGMVAS NQATAYCAAK
AAEIQLSRSF ALEGAPLGIR SNVVNPDAVI RGSKIWTGKW SEERAAANKI DEGDLEAFYR
DRSMLKRSVF PEDIAEATYF FAAEHLSAKS TGNILNVDAG NLAAFTR
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