| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2212 |
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| Symbol | |
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| ID | 6160977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2413143 |
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| End bp | 2414135 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641664981 |
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| Product | rhamnose ABC transporter, periplasmic rhamnose-binding protein |
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| Protein accession | YP_001791243 |
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| Protein GI | 171058894 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02637] rhamnose ABC transporter, rhamnose-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.104968 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACCC GAATCAAACT GATCGCCGCC GCCGCCCTGG CGGTCTGCAT GGTGAGCCCG
GCCATGGCCG CCGACAAGAT CGCGCTGGTC GTCAAGAGCC TGGGCAACGG CTTCTTCGAT
GCCGCCCACC AGGGCGCGCT GGAAGCGGCC AAGGAATTGA AGGACGTCGA GATCATCTAC
ACCGGCCCGG CCAAGGCCAC GGCCGAAGGC CAGATCGAGA TCATCAATTC GCTGATCGCG
CAGAACGTCA AGGCCATCGT CATTTCGGCC AACGACCCGG ACGCGCTGGT GCCGTCGCTG
AAGAAGGCGA TGTCGCGTGG CATCAAGGTC ATCTCCTTCG ACTCGGGCGT CAAGAAGGAA
GGCCGGCTGA TGCAGCTGAA CCCGTCCAAC AGCGCGCTGA TCGGCGAGAA GCTGGTCAAG
ATGAGCGAGC AGGTGGTAGG CAAGACGGGC GAGATCGCCG TGCTGTCGGC CACTGCGCAG
GCCACGAACC AGAACATCTG GATCGGCGAG ATGAAAAAGG TGCTGGCGCA GCCCGGCTAC
AGCGGCCTGA AGCTGGTCAA CGTGGTCTAC GGTGACGACC AGACCGACAA GAGCTATCGC
GAAGCACAAG GCCTGTTCAA GAGCTACCCG AACCTGAAGG CGATCGTGGC CCCGACCACG
GTGGGCATTG CCGCCGCCGC CAAGGCGGTG CAGGACGAGA AGAAGGTCGG CCAGATCTTC
GTCACCGGCC TGGGCCTGCC GTCCGAGATG GCCGGACACG TCAAGAGCGG CGCGGTCAAG
TCGTTCGCGA TCTGGAATCC GATCGACCTC GGCTACTCGT CGATCCACAT CGCGCATGCC
TTCATGAAGG GCAAGGCCAA GGGCACTGCG GGCGAGAAGA TCTCGCTCGG CCGCGTCGGC
ACGACCACGC TCGATGCCAA CCTTGAGGGC GCGATGGCCG AGCCGTTCAC CTACGACGCC
GGCAACGTCG AGCAGTTCGC GAAGATTTTC TAA
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| Protein sequence | MTTRIKLIAA AALAVCMVSP AMAADKIALV VKSLGNGFFD AAHQGALEAA KELKDVEIIY
TGPAKATAEG QIEIINSLIA QNVKAIVISA NDPDALVPSL KKAMSRGIKV ISFDSGVKKE
GRLMQLNPSN SALIGEKLVK MSEQVVGKTG EIAVLSATAQ ATNQNIWIGE MKKVLAQPGY
SGLKLVNVVY GDDQTDKSYR EAQGLFKSYP NLKAIVAPTT VGIAAAAKAV QDEKKVGQIF
VTGLGLPSEM AGHVKSGAVK SFAIWNPIDL GYSSIHIAHA FMKGKAKGTA GEKISLGRVG
TTTLDANLEG AMAEPFTYDA GNVEQFAKIF
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