| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2208 |
|---|
| Symbol | |
|---|
| ID | 6163310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2409164 |
|---|
| End bp | 2409484 |
|---|
| Gene Length | 321 bp |
|---|
| Protein Length | 106 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641664977 |
|---|
| Product | L-rhamnose 1-epimerase |
|---|
| Protein accession | YP_001791239 |
|---|
| Protein GI | 171058890 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3254] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02625] L-rhamnose 1-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.356226 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCG AAAAGATCGC CTTCCGCATG TTCCTCAACC CCGGCTGCGA GGCCGAGTAC
CAGCTGCGCC ACGACCGCAT CTGGCCCGAA CTGGTGGCGC TGTTGAAGAA CAGCGGCGTC
AGCGACTACA GCATCTTTCT CGACGAGCCG CGCGGCGTGC TGTTCGCCGT GCTGAGCCGC
AGCCCCGGTC ACACGATGCA GACGCTGCCG CAGCACCCGG TGATGCAGCG CTGGTGGCAG
CACATGAAGG ACATCATGCG TTGCAACCCC GACGGCTCGC CGGTGGCCGA GCCGCTGCCG
TGTCTGTTCC ATCTCGACTG A
|
|---|
| Protein sequence | MTTEKIAFRM FLNPGCEAEY QLRHDRIWPE LVALLKNSGV SDYSIFLDEP RGVLFAVLSR
SPGHTMQTLP QHPVMQRWWQ HMKDIMRCNP DGSPVAEPLP CLFHLD
|
|---|
| |