| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2176 |
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| Symbol | |
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| ID | 6163155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2382479 |
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| End bp | 2385145 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641664944 |
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| Product | ATP-dependent transcription regulator LuxR |
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| Protein accession | YP_001791207 |
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| Protein GI | 171058858 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.250716 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCACCG CCGGATCCGC CCGCATCGAC GACGAACTGG TCCTCAAGGT CACGCCGCCG
CGCCTGGCGC GCCACCTGCC GAACCGCTCG CGCCTGCTGG CCGACGACGC ACGCTGGCGC
GATGCGCCGG TGGTGCTGGT GCAGGCGCCG GCCGGCTACG GCAAGACCTC GCTGCTGGCG
CAGTGGCGGC GCGAACACCT GGCGCAGGGC CACGTGGTGG CGTGGCTGAC GGCGCAAGGT
CGCGACGATC CGCAGCGCCT GCTGCAGGCG CTGGCGCTGT CGGTGCGCAA TGCCAGCGGC
CGGCCGACCT TCGGCCACAC GCTGCTCGAA TCGGTGGCCT CGGGCGAGCT CGAGGGCTAC
ACCCGCTGGC TGGCCGCGGT CGCCCAGCTG GCGATGGATG TGGTGCTGGT GCTCGACGAG
ATCGAGCGCC TGCCGGCCGC CTCGCTCGAC CGCCTGACCT ACCTGATGCG CAACGCGCCG
CCGAATCTGC GCGTGCTGGT GGCCGCGCGC AACGAGGTCA ACCTGGCGCT CGATGACCTG
ATCGCCTACG GCCAGTGCGT GCTGCTCGGC CCCGGCGCGC TGGCGCTGCA GCTCGACGAG
ACGCTCGAGG TGGTGCGCCA GCGCTTCCCG GCCCGGGTCG ACTACGACCT GGCCGCCCGC
CTGCACGAGC TGGTCGACGG CTGGCCTCTG GGCCTGCAGC TGGCGCTGTC GCTGCTGGCG
CGCAGCACCG ACCGGGTCGC CGCGGTGGGC GAGCTGGCTC GGCACGGTGG CGGCCTGCGT
GACGAGCTGG TCGGCCTGCT GCTCGCCAAC CTCGACCCGG CGGACCGCGA TTTCCTGGTC
CGCATCGCCA TCCTCGACCG CATCCACCCC GAGCTGTGCC GCGCGGTGGT CGGCGCCGAC
GACGCCGGCG AGCGCCTGAC GCGCCTGATG CGCGACACGC CGGTCTTCGT CGGTGCCGAA
CAGGGCGAGT GGCTGCGCAT GCACCACCTG GCGCGCGATC AGCTGCGCCT GCGTTGCGCC
GAGCTGCCGG CGGCCGAACG GGCGGCGCTG CACGGCCGGG CGAGCGACTG GCTGGCGCGC
CAGGGCCTGA TCGAGGCGGC GGCCTGGCAT GCGCTGGCCG CGGGCGAACA CGAGCGCGCC
TACCAGCTCG CCGAACGCAG CCTGTACGAG TCGATCCTGA CCCGCGGCCG CCAGGCCACG
GTGTTCGAGT GGCTGGAGCG CCTGCCGCGC GCCGAGCTCG AGCGCCGCCC GCGGCTGCTG
CTGGCCGCCG CCTGGTCGCT GGCGCTCAGC GAACGCCATG CCGAGGCGGT GCGGCTGATC
GAACACCTGC ACGGCCAGCC CGGCATCGCG CCCGAGCTGC AGTGCGAATG CGCGCTGATC
CTGGGCGGCG CGGCGGTGTT TGCCGACCAG CCCGACCGCT ACGCCGAACT GCACGACCCG
TGGGCCGAGC TGCCGCTGCG CGATCCGCTG CTGCGTTTCG TGCAGGCCAA CCGCAACGCC
TTCCGGGCCC TGATCGACGG CGATCCGGCG CTCGCCCGGA TGCGCCAGCA GCTGGCGCCG
CGCGAGGATC TGGGCTCGGC GCTGGCCCAT GTGACGCGCT GGGGCGACTT TATCGTCGGC
CTGAGCTACC TGTGGGAAGG CCAGGTGCGC CTGGGCGAGA ACCTGCTGCG CCCGACCCTG
CAGGGCGCCG AGGGCGAACT CGGCCGCCGC AGCAGCTTTG CCAGCATGCT GGCCGCGCTG
CTGGCGGCGG CGGTGTGCGA GCGCGGCCGG CCGGCCGAAG CCGCGGCGCT GCTGGCGAAC
CGGCTCGACG TGCTCGAACG CAGCGGCCTG CCCGAGGCGG TGCTGCTCGG CTACCGCACC
GCCGCGCGGG TGGCGATGGC CGAAGGGGCC GAAGACCGCG CCATCGAGCT GCTCGGCGCC
ATGCACGCGG TGGGCGTCAC GCGCCATCTG CCGCGGCTGC GCCTGGCCAG CCTGGTCGAG
CAGCTGCGCA TCCATGCGCG CGGCTACCGG GCCGCGACCT GCCGGGCGCT GCTGGTGCAG
GTCGAGGCCT TCTTCGACGA ACCCGGCCTG CCCGACGGTC GGCTCTGGCG CCGCTCGGTC
GAGCTGCTGC GCCACGTGGC GCATGCGCTA GCGGCGATCG GCGCGCAGGA GTGGCGCCGC
GCGGTGGCGC CGCTCGACCG CGCCGAGGCG CTGGTGCGCG AGCTGCGGCT GGGCCGTCAG
CAGATCGAGC TGCTGGCGCT GCGCGCCTTC GTGCTCGACC GCTGCGGCGA GGACAGCCGC
GAGCAGCTGC GCGAGGTGGT CGACCTGGCC GACGCGATGG GGCTGGGGCG CGTTTTCATC
GACGCCCACC CCGAGCTCGA CGCCTGGGCG CTCCGCAGCG TCGATAGCTG GGGCGCGCGT
GGCGCCGCCA GCGCGCCCAA GCCGGCCCCC CGCGAGAACC CGGCCCTGCG CGCCACGCCG
AGCATGGCGC TGACGCCCAA GGAGCGCGAG GTGCTGGAGC TGCTGGCGCG CAACCTCTCC
AACAAGGAGA TCGGCCTGGC GCTGCAGGTG GGCGAGGAGA CCATCAAGTG GCACATGAAG
AACCTGTTCG CCAAGCTCGA CGCCGGCACG CGCAAGCAGG TGGTGTCGCG GGCCCGCATC
CTGGGCCTGT TCGAACAGGA CGCCTGA
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| Protein sequence | MPTAGSARID DELVLKVTPP RLARHLPNRS RLLADDARWR DAPVVLVQAP AGYGKTSLLA
QWRREHLAQG HVVAWLTAQG RDDPQRLLQA LALSVRNASG RPTFGHTLLE SVASGELEGY
TRWLAAVAQL AMDVVLVLDE IERLPAASLD RLTYLMRNAP PNLRVLVAAR NEVNLALDDL
IAYGQCVLLG PGALALQLDE TLEVVRQRFP ARVDYDLAAR LHELVDGWPL GLQLALSLLA
RSTDRVAAVG ELARHGGGLR DELVGLLLAN LDPADRDFLV RIAILDRIHP ELCRAVVGAD
DAGERLTRLM RDTPVFVGAE QGEWLRMHHL ARDQLRLRCA ELPAAERAAL HGRASDWLAR
QGLIEAAAWH ALAAGEHERA YQLAERSLYE SILTRGRQAT VFEWLERLPR AELERRPRLL
LAAAWSLALS ERHAEAVRLI EHLHGQPGIA PELQCECALI LGGAAVFADQ PDRYAELHDP
WAELPLRDPL LRFVQANRNA FRALIDGDPA LARMRQQLAP REDLGSALAH VTRWGDFIVG
LSYLWEGQVR LGENLLRPTL QGAEGELGRR SSFASMLAAL LAAAVCERGR PAEAAALLAN
RLDVLERSGL PEAVLLGYRT AARVAMAEGA EDRAIELLGA MHAVGVTRHL PRLRLASLVE
QLRIHARGYR AATCRALLVQ VEAFFDEPGL PDGRLWRRSV ELLRHVAHAL AAIGAQEWRR
AVAPLDRAEA LVRELRLGRQ QIELLALRAF VLDRCGEDSR EQLREVVDLA DAMGLGRVFI
DAHPELDAWA LRSVDSWGAR GAASAPKPAP RENPALRATP SMALTPKERE VLELLARNLS
NKEIGLALQV GEETIKWHMK NLFAKLDAGT RKQVVSRARI LGLFEQDA
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