| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2172 |
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| Symbol | |
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| ID | 6163151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2377914 |
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| End bp | 2379272 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641664940 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001791203 |
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| Protein GI | 171058854 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.072779 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCTGC CACCCCCTGA CGCCCGCGCC GGCGACGACT ACCTGGTCGG CCGCGGCGCC
GCCTGGTTCG CCTTCGCGAT GACGATCGCA CTGATGGTGT TCGACTACCT CGACCGGCAG
ATCATCGTGT CGCTGTTCCC GCACATCAAG GCCGAGTGGG GGCTGTCGGA CAGCCAGCTG
GGCGCGCTGG TGTCGGTGGT GTCGGTGACG GTGGCGCTGT GCGGCCTGCC GGTGGCGCTG
CTGGCCGACC GCGCCAGCCG CGTCAAGAGC ATCGTCGTGA TGGCCACGGC CTGGAGCCTG
GCGACGCTGT CGTGCATGTT CACGCGCAAC TACGGCCAGC TGCTGGCGGC GCGCGCGGTG
GTGGGCGTGG GCGAAGCCGG TTACGGCTCG GTCGGCGCGG CACTGATCGC CAGCCACTTT
CCGGCCCGGC TGCGTGGCGC GCTGATGGCG GCGTTCTTCG CGTCGGCGTC GGTCGGCTCG
GTGCTCGGCG TGCTGCTGGG CGGCATGATC GCGGCACGCT GGGGCTGGCA AGCGGCCTTC
GGCGTGGTCG GCGCGCCCGG CCTGGTGCTG GCACTGCTCT ACCTGAAGGT GCGCGACTAC
CGCACCGTCG CGCTCGACCC GGGCCGCGAG AAGGCGGCTC AGTCGACCGC CGGCGCGGCG
CGGTTTGCGG CCTTTGCGCT GCTGCGTTCG CGCACGCTGC TGTGGGCCTG CATCGGCGGC
GCGGCGCAGC TGGTCGTGGT GTCTGCGATC TGGTCGTGGC TGCCGAGTTT CCTGAATCGC
GTGCACGGCG TCGCCGCTGA AAACGCCGGC GCCCGCGCCG CGCTGGTCGT GCTGGCCGGT
GCCGCCGGCA GCGTGGTCTG GGGCGCGGTG GCCGACCGTG CCGGCCGCCG CCAGCCGCGC
GACAAGCTGC GCGTGGTCGC CGGGTTGTGC CTGCTGGCGA TGGCGATCCT GGTGACGGCC
TTTGCCGGCC CGGCCTTCGG TCTGGCGATG AGCCCGTCCG CCCAGTTCGG CCTGATCCTG
GCCGGCGGCT TCGTCATGAC CTGCACCGTC GGCCCGGTGT CGGCGGTGGT GATCGACGTG
GTGCACCCGG GCGTGCGGGC CACCGGCGCG TCGGTGCTGT CGCTGTTCCA GAACCTGTTC
GGGCTGGCGG CCGGGCCGCT GATTGCCGGC GGCTTGTCCG ATGCGCTGGG CCTGTCGACC
GCGCTGGCCA TCACGCCGCT GTTCGGCATC GTCGCCGCGC TGGCCTTCGT GCGTGCCACG
CGAAGCTACG AGTCCGACCT GCGCGCGGTG CAGCCGGCGC CGCCGGCCAG CGATCCGCCA
TACCCGCTCG CGGGCGCCGA GCGCGCCGCG CCGGCCTGA
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| Protein sequence | MHLPPPDARA GDDYLVGRGA AWFAFAMTIA LMVFDYLDRQ IIVSLFPHIK AEWGLSDSQL
GALVSVVSVT VALCGLPVAL LADRASRVKS IVVMATAWSL ATLSCMFTRN YGQLLAARAV
VGVGEAGYGS VGAALIASHF PARLRGALMA AFFASASVGS VLGVLLGGMI AARWGWQAAF
GVVGAPGLVL ALLYLKVRDY RTVALDPGRE KAAQSTAGAA RFAAFALLRS RTLLWACIGG
AAQLVVVSAI WSWLPSFLNR VHGVAAENAG ARAALVVLAG AAGSVVWGAV ADRAGRRQPR
DKLRVVAGLC LLAMAILVTA FAGPAFGLAM SPSAQFGLIL AGGFVMTCTV GPVSAVVIDV
VHPGVRATGA SVLSLFQNLF GLAAGPLIAG GLSDALGLST ALAITPLFGI VAALAFVRAT
RSYESDLRAV QPAPPASDPP YPLAGAERAA PA
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