Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2171 |
Symbol | |
ID | 6163150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2376173 |
End bp | 2377813 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641664939 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001791202 |
Protein GI | 171058853 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.109477 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGGAC TGATGCAAGA CCAGCCGCTG CTGATTTCCA GCCTGCTGAC CCACGCCGAA CGCCATCACG GCGAACAGGA AATCGTCTCG CGCCGCGTCG AGGGCGACCT GCACCGCCAG ACCTATCGCC AGCTCGCCCA GCGCTCGCGC CAGCTCGCCA AGGCGGTCGC CGCACTCGGC GTCACCGAAG GCCAGCGCGT CGCCACATTG GCCTGGAACG GCCATCGCCA CATGGAGCTG TATTACGCCG TGTCGGGCTC GGGCGCCGTG CTGCACACGC TCAACCCGCG CCTGCATCCC GACCAGGTGG TCTGGATCGC CGACCACGCC GAAGACCAGG TGCTGTGTTT CGACCTGACC TTTTTGCCGC TGGTCGAGGC CATCGCCGAG CGCGTCTCGA CGATCAGGCA TTTCGTCGTG ATGACCGACC GCGCCCACAT GCCGGCCGCC AGCAAGGTGC CGAACCTGCT GTGCTACGAA GACCTGCTCG CCGCACAGGA CGACGCCTTC GAATGGCCCG TGTTCGACGA GAACCGCGCC AGCTCGCTGT GCTACACGAG CGGCACCACC GGCCACCCGA AAGGCGCGCT CTACAGCCAC CGCTCGACCG TGCTGCACAC CTGGGCCGCG GCGCTGCCCG ACAGCCTGAA CTGCTCGGCG CGCGACGTGA TCCTGCCGGT GGTGCCGATG TTCCACGTCA ACGCCTGGGG CCTGCCCTAC ATCGCGTGCA TGGTCGGCGC CAAGCTGGTG TTCCCCGGCC CGTGGCTCGA TGGCAAGAGC CTGCACGAAC TGTTCGAGGG CGAGGGCGTC ACGATGTCGG CCGGCGTGCC CACCGTCTGG CAGGGCCTGC TGGCGCACGT CGAGAGCCAC CACCTGAATT TTTCCACCAT GCGCCGCACG GTGATCGGCG GCTCGGCCTG CCCGCCGGCC ATGATGCGCG CCTTCCAGGA GCGTTACGAC GTGCAGGTGC TGCACGCCTG GGGCATGACC GAGATCAGCC CGGTCGGCAC CGTCTGCACG CTCAAGCCGC GCCATGAGTC GCTCGGCGCC GACGAACGCA TGGCGGTGCA GGCCAAACAG GGCCGCGTGG TCTACGGCGT CGACATGAAG ATCGTCGGCG ACGATGGCCA GCCGCTGCCG CACGACGGCA AGGCGGCCGG CGAGCTGATG GTGCGCGGGC CGTGGATCAT CCGCAGCTAC CTGAAGAGCG AGGGTGGCGA CCCCTTGGCG TATCAGGATG GTCAGGGCTG GTTCCCGACC GGCGACGTCG CCACCATCGA CGCCGACGGC TACATGCAGA TCACCGACCG CGCCAAGGAC GTCATCAAGT CCGGCGGCGA GTGGATCGGC TCGATCGACC TGGAGAACGT GGCGATGTCG CACCCCGGCG TCGCGATCGC CGCCTGCATC GCCGCCCGCC ACCCCAAGTG GGACGAGCGC CCGCTGCTGC TGGTGGTGAA GAAGCCCGGC GCCGAGCTGA CGCGCGAGGA TCTGCTCAAG CACTACGAAG GCAAGATCGC CAAGTGGTGG ACGCCCGACG ACGTGCTCTT CGTCGACTCG ATCCCGCTCG GCGCCACCGG GAAGATGCTC AAGAACCGCC TGCGCGACCA GTATCGCGAC CACCTGATGT CGGCGGCCTG A
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Protein sequence | MNGLMQDQPL LISSLLTHAE RHHGEQEIVS RRVEGDLHRQ TYRQLAQRSR QLAKAVAALG VTEGQRVATL AWNGHRHMEL YYAVSGSGAV LHTLNPRLHP DQVVWIADHA EDQVLCFDLT FLPLVEAIAE RVSTIRHFVV MTDRAHMPAA SKVPNLLCYE DLLAAQDDAF EWPVFDENRA SSLCYTSGTT GHPKGALYSH RSTVLHTWAA ALPDSLNCSA RDVILPVVPM FHVNAWGLPY IACMVGAKLV FPGPWLDGKS LHELFEGEGV TMSAGVPTVW QGLLAHVESH HLNFSTMRRT VIGGSACPPA MMRAFQERYD VQVLHAWGMT EISPVGTVCT LKPRHESLGA DERMAVQAKQ GRVVYGVDMK IVGDDGQPLP HDGKAAGELM VRGPWIIRSY LKSEGGDPLA YQDGQGWFPT GDVATIDADG YMQITDRAKD VIKSGGEWIG SIDLENVAMS HPGVAIAACI AARHPKWDER PLLLVVKKPG AELTREDLLK HYEGKIAKWW TPDDVLFVDS IPLGATGKML KNRLRDQYRD HLMSAA
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