Gene Lcho_2167 details

Gene Information

• Locus tag: Lcho_2167
• ID: 6163499
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2370313
• End bp: 2372349
• Gene Length: 2037 bp
• Protein Length: 678 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641664935
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_001791198
• Protein GI: 171058849
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein; [COG4564] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 0.195593
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAATCGA CGACGACGAC ACTGTCCGCG CCGGACAACA GGCCCCCTGC GGGGGATGCG 
GGCTTCTTCG CCCACCACGG CTTGTGGGCA CCCGGGGTGC GGCTGTTCCG GCGGCTGCGC 
TTCATGTCCA AGGCCACCAT CATCTCGCTG GCCTTCACGC TGCCTTTGCT GGGGGTCCTG 
TCCTGGCAGA TGAAGACCCA GCACGAGCAG GCGCTGCAGG CGCGGCTGGA CGCGACGCGC 
CAGCACGTGG AGGTGGCCCA CGGCCTGATC GTCTGGGCCC AGGCGCAGGA GGCCAGCGGC 
CAGATGCCGC GCGAACAGGC CCAGCAGATG GCGCTGCGCG CCCTGGCGGC GCTGCGCTAT 
GACGGCAACG CGTATTTCTG GGTCAACGAC ATGCAGCCGC GGGTGCTCAT GCACCCCGTC 
ACCCCGGCGC TCGACGGCCA GGATGTCGGC GGCATGCAGG ATGCCGACGG CCAGTTCCTG 
TTCAAGGCCT TCGTGGCCGA GGTGCGCCAG CACGGCAAGG GTTTCGTGTT CTACCAGTGG 
CCCAGGCCCG GCCAGGAGAA ACCGGTGGAC AAGGTGTCCT ACGTGATGGG TTTCGAGCCG 
TGGGGCTGGG TCGTCGGGTC GGGGGCGTAC ACGGGCGACA TACGCCAGGC CGCGCTGCAG 
ACGGCGGCCT GGACCGCGGG CATCGTGGCG GCCGCGCTGC TGCTCGCGTC GTACCTGTTC 
CTGTGTTTCT ACCGCGTCAT GGACGGCGGG CTGCGCGAGA CCCGGCGCCA CCTGCGCGCC 
ATGACCGCCG GCGACCTGAC GACATCGCCC TCGCCGTGGG GTCGCGACGA GGCTGCGCAA 
CTGATGTTCG AACTGCGCGC CATGCAGGAA TCGCTGCGCG GCATGGTGCT GCGGGTGCGC 
CGTTCGAGCG ACGACATCGT GCACTCCAGC AGCGAGATCG CCAGCGGCGC GATGGATCTG 
TCGGCCCGCA CCGAACAGAC CGCCGCCAAC CTCGAACAGT CGGCGGCATC GATGGAACAG 
ATCGCATCGA CGGTGAAGAT CACCGCCGAG CACACCCAGG AGGCCGCGGG CGTGGCCCGC 
CACAACGCCC GCAGCGCCGC CGACGGGGGC CGCGTGATGA CCGAGGTGGT GCAGACGATG 
GAAGGCATCC GCTCGTCGTC GACGCAGATC GGCGACATCA TCGGCACCAT CGACAGCATC 
GCCTTCCAGA CCAACATCCT CGCCCTCAAT GCCGCCGTCG AAGCAGCGCG CGCCGGCGAA 
CAGGGGCGCG GTTTCGCGGT GGTCGCCAGC GAGGTCCGCA CCCTGGCCCA GCGCAGCGCC 
AATGCGGCAC GCGAGATCAA GACCCTGATC GGCCGCAGCG TCGAGCAGGT CGAGGCCGGC 
ACGGCCATCG TGCGCAATGC CGGCGCGGCC ATCGACGAGA TCGTGGCCTC GTCGCAGCGT 
GTCGACCACC TGCTGGGCGA GGTGGCGGTC GGCGCCCGCG AGCAGAGCCT CGGGGTCGGC 
CAGATCGGCG AGGCCGTCCA GGAACTCGAT CGCATGACCC AGCAGAACGC CGCGCTGGTG 
GAAGAAACGG CGGCCGCCTC CGCGGCCATG AAAGACCAGG CCCACGCGCT GGCCGAAGAG 
GTCGCACGCT TCAAGATGCC GGCGGGGCTG GTGCTCGGGG CGGCGAGCGA GACCGTCGCG 
GCGGCCGACT TCGATTTCGA CAAGGCGATC GAGGCGCATC GGCAGTGGAA GGTCAAGCTG 
CGCCAGGCGA TCGCCAGCCA CGACAAGCTC GACGCCGACA AGATCTGCCG CGACGACCAG 
TGCCCGCTCG GCCAGTGGAT CCACGGCCCG GGCGGCACGC AATGGGGAAC CCGGCCGACC 
TTCGTGGCAC TGCTCCAGAA ACACGCCGAG TTCCACCAGA CCGCCGGCGG CTTGGCCCGC 
CAGATCAACG CCGGCCACTA CGCGCAGGCC GAGCAGCTGA TCGGCGCGGG ATCGCCATTT 
GCGCAGGTGT CGACCGAAGT GGCGACGATC CTCACGCGCG CCAAGCGCGG GCTGTAG 

 

Protein sequence

MQSTTTTLSA PDNRPPAGDA GFFAHHGLWA PGVRLFRRLR FMSKATIISL AFTLPLLGVL 
SWQMKTQHEQ ALQARLDATR QHVEVAHGLI VWAQAQEASG QMPREQAQQM ALRALAALRY 
DGNAYFWVND MQPRVLMHPV TPALDGQDVG GMQDADGQFL FKAFVAEVRQ HGKGFVFYQW 
PRPGQEKPVD KVSYVMGFEP WGWVVGSGAY TGDIRQAALQ TAAWTAGIVA AALLLASYLF 
LCFYRVMDGG LRETRRHLRA MTAGDLTTSP SPWGRDEAAQ LMFELRAMQE SLRGMVLRVR 
RSSDDIVHSS SEIASGAMDL SARTEQTAAN LEQSAASMEQ IASTVKITAE HTQEAAGVAR 
HNARSAADGG RVMTEVVQTM EGIRSSSTQI GDIIGTIDSI AFQTNILALN AAVEAARAGE 
QGRGFAVVAS EVRTLAQRSA NAAREIKTLI GRSVEQVEAG TAIVRNAGAA IDEIVASSQR 
VDHLLGEVAV GAREQSLGVG QIGEAVQELD RMTQQNAALV EETAAASAAM KDQAHALAEE 
VARFKMPAGL VLGAASETVA AADFDFDKAI EAHRQWKVKL RQAIASHDKL DADKICRDDQ 
CPLGQWIHGP GGTQWGTRPT FVALLQKHAE FHQTAGGLAR QINAGHYAQA EQLIGAGSPF 
AQVSTEVATI LTRAKRGL