Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2165 |
Symbol | |
ID | 6163497 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2367396 |
End bp | 2369822 |
Gene Length | 2427 bp |
Protein Length | 808 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664933 |
Product | transporter, putative |
Protein accession | YP_001791196 |
Protein GI | 171058847 |
COG category | [R] General function prediction only |
COG ID | [COG1033] Predicted exporters of the RND superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.119631 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATGCAC CCCACGACTC CAGCGCGCCC CTGCCCGGCA GCGACACCTT CGACCCGCAA TCGGGTTCGC GCCTCGAACG GCTGGTGTTC AACCACCGGC GCGCCGTGAT GATCCTGTGC GCGCTGCTGA CGCTGCTGTT CGGCGCGCTG GCGGCGAGCC GGCTGACGCT CAACGCCAGC TTCGAGAAGA TGATTCCGCG CAGCCACCCG CACATTCAGA ACTACCTCGC GCACCGCGAG GATCTGCGCG GCCTGGGCAA TGCGCTGCGC ATCGTGGTCG AGAACCCGTC GGGCAGCATC GACGCGCCGG CTTACCTCGA TGCGCTCAAG AAGATCCACG ACGAGGTTTT CCTGACGCCC GGTGTCGACC GCGCCTGGGT CAAGTCGCTG TGGGCGCCGG GCGTGCGCTG GACCGAGGTC ACCGAAGAAG GTTTCCGCGG CGGCCCGGTG ATGCCCGACA ACTACGACGG CTCGCCGGCC GCGATCGAGC AGCTGCGCGG CAACATCGCA CGCGCCAACC TGGTCGGCAA TCTGGTGGGC AAGGACATGC AGTCGAGCAT GATCGTCGCG CCGCTGCTCG ACCGCGACCC GGCCACCGGC GAGCGCATCG ACTACCGCCA GCTCGCGCAG GCGATCGAGC AGATCCGCGC TCGCCACGAA GGCCCGGCGC TGCGCCTGCA CGTGATCGGC TTCGCCCAGC TGGTGGGCGA CCTGATCGCC GGCCTGCTGC AGGTGGCGAT CTACTTCGGC CTGGCGGCGG CGATCGCCAC CGCCATCATC TACGGCTACA CCCGTTGCGT GCGCAGCACC GCGCTGGTGG TGGCGTGTTC GTTGGTGGCG GTGGTCTGGC AGCTCGGGCT GGTGGCGGCG CTCGGCTTCG AGCTCGACCC GTATTCGATC CTGGTGCCCT TCCTGGTGTT CGCCATCGGC GTGAGCCACG GCGCGCAGAA GATGAACGGC ATCATGCAGG ACATCGGCCA GGGCGCACCC AAGGAGGTGG CCGCGCGCTT CACGTTCCGG CGCCTGTTCC TGGCCGGCGT GACCGCGCTG GTGGCCGATG CGGTGGGTTT CGGCGTGCTG ATGCTGATCG ACATCGCCGT GATCCGCGAC CTGGCACTCA CCGCGAGCCT GGGCGTGGCG GTGCTGATCG CCACCAACCT GATCCTGCTG CCGGTGCTGC TGTCGTACTG CGGCGTCAGC GCCGCGGCGG CCGAGCGCAG CCTGAAGGCC GACAAGCCCG GCAGCGTCAG CCACTTCGTG CTCGCAGGGC TGGCGCGTTT CACCGAACGC CGCTGGGCGA CGGTGACGAT CGCCGTCGCC GCGCTGCTGA GCGTGGGCGG CTACCTCGTC AGCACGAAGC TGCAGATCGG CGACCTCGAC CCCGGCGCGC CCGAGCTGCG TGCCGACTCG CGCTACAACC GCGACAACGC CTACGTCACC GGCCACTACG CGCTCTCCAG CGACACCTAC GCGGTGATCG TCAAGACCGA AAAAGAAGGC TGCCTGAAGT ACGACACCCT GGTCGAGGCC GACCGGCTGG CCTGGACGCT GCAGCAGGTT CCCGGCGTGC AGACCACCGC CGCGCTGACG CAGGCGGTGC GCCAGATCAC CGCCGGCAGC TACGAGGGCA ACCCGAAGTG GCTGACCATC GCGCGCAACC AGGACACGCT CAACTACGGC GCCCAGCAGG CCAGCGTCAA CAACCCGGAT CTGTTCAACA CCGACTGCTC GGTGATGCCG GTGATCGCCT ACCTGGCCGA CCACCGCGCC GACACGCTCG ATCGGGTCGG CGCCGCCGCC GCCGACTTTG CCGCCGCGCA CAGCACGCCC GAGCGCCAGT TCCTGCTCGC CGCCGGCCCG GCCGGCATCG AGGCTGCCAC CAACAGCGTC GTGCGCAAGG CCTGGACGCA GATGCTGCTG TGGGTCTACG CGGCGGTCAC GGTGCTGTGT TTCATCACCT TCCGCAGCTG GCGCGCGGTG GTGGTGGCCG TTGTTCCGCT GGTCATCACC TCGGTGCTGT GCGAGGCGCT GATGGTGGCG CTGGGCATCG GCGTCAAGGT GGCGACGCTG CCGGTGATCG CGCTGGGCGT GGGCATCGGC GTCGACTACG CGCTGTATCT GCTGAGCGTG CAGCTGCAGC AGCAGCGCGC CGGTGCCACG CTGATCCTGG CCTACGCGCA GGCGCTGCGC TTCACCGGCA AGGTGGTCGC GCTGGTCGGC GTGACGCTGG CCGCCGGCGT GGCGACCTGG GCGCTGTCGC CGATCAAGTT CCAGGCCGAC ATGGGCGTGC TGCTGGCCTT CATGTTCGTC TGGAACATGG TCGGCGCGGT GCTGCTGATC CCGGCGCTGT CGTACTTTCT GCTGCCCGAA GGCGTGATGG CGCGCCGCCG CGCCAGCGCC ACGCTCACCC CCGTTGTCAG CGTCTGA
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Protein sequence | MHAPHDSSAP LPGSDTFDPQ SGSRLERLVF NHRRAVMILC ALLTLLFGAL AASRLTLNAS FEKMIPRSHP HIQNYLAHRE DLRGLGNALR IVVENPSGSI DAPAYLDALK KIHDEVFLTP GVDRAWVKSL WAPGVRWTEV TEEGFRGGPV MPDNYDGSPA AIEQLRGNIA RANLVGNLVG KDMQSSMIVA PLLDRDPATG ERIDYRQLAQ AIEQIRARHE GPALRLHVIG FAQLVGDLIA GLLQVAIYFG LAAAIATAII YGYTRCVRST ALVVACSLVA VVWQLGLVAA LGFELDPYSI LVPFLVFAIG VSHGAQKMNG IMQDIGQGAP KEVAARFTFR RLFLAGVTAL VADAVGFGVL MLIDIAVIRD LALTASLGVA VLIATNLILL PVLLSYCGVS AAAAERSLKA DKPGSVSHFV LAGLARFTER RWATVTIAVA ALLSVGGYLV STKLQIGDLD PGAPELRADS RYNRDNAYVT GHYALSSDTY AVIVKTEKEG CLKYDTLVEA DRLAWTLQQV PGVQTTAALT QAVRQITAGS YEGNPKWLTI ARNQDTLNYG AQQASVNNPD LFNTDCSVMP VIAYLADHRA DTLDRVGAAA ADFAAAHSTP ERQFLLAAGP AGIEAATNSV VRKAWTQMLL WVYAAVTVLC FITFRSWRAV VVAVVPLVIT SVLCEALMVA LGIGVKVATL PVIALGVGIG VDYALYLLSV QLQQQRAGAT LILAYAQALR FTGKVVALVG VTLAAGVATW ALSPIKFQAD MGVLLAFMFV WNMVGAVLLI PALSYFLLPE GVMARRRASA TLTPVVSV
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