Gene Lcho_2165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2165 
Symbol 
ID6163497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2367396 
End bp2369822 
Gene Length2427 bp 
Protein Length808 aa 
Translation table11 
GC content69% 
IMG OID641664933 
Producttransporter, putative 
Protein accessionYP_001791196 
Protein GI171058847 
COG category[R] General function prediction only 
COG ID[COG1033] Predicted exporters of the RND superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.119631 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGCAC CCCACGACTC CAGCGCGCCC CTGCCCGGCA GCGACACCTT CGACCCGCAA 
TCGGGTTCGC GCCTCGAACG GCTGGTGTTC AACCACCGGC GCGCCGTGAT GATCCTGTGC
GCGCTGCTGA CGCTGCTGTT CGGCGCGCTG GCGGCGAGCC GGCTGACGCT CAACGCCAGC
TTCGAGAAGA TGATTCCGCG CAGCCACCCG CACATTCAGA ACTACCTCGC GCACCGCGAG
GATCTGCGCG GCCTGGGCAA TGCGCTGCGC ATCGTGGTCG AGAACCCGTC GGGCAGCATC
GACGCGCCGG CTTACCTCGA TGCGCTCAAG AAGATCCACG ACGAGGTTTT CCTGACGCCC
GGTGTCGACC GCGCCTGGGT CAAGTCGCTG TGGGCGCCGG GCGTGCGCTG GACCGAGGTC
ACCGAAGAAG GTTTCCGCGG CGGCCCGGTG ATGCCCGACA ACTACGACGG CTCGCCGGCC
GCGATCGAGC AGCTGCGCGG CAACATCGCA CGCGCCAACC TGGTCGGCAA TCTGGTGGGC
AAGGACATGC AGTCGAGCAT GATCGTCGCG CCGCTGCTCG ACCGCGACCC GGCCACCGGC
GAGCGCATCG ACTACCGCCA GCTCGCGCAG GCGATCGAGC AGATCCGCGC TCGCCACGAA
GGCCCGGCGC TGCGCCTGCA CGTGATCGGC TTCGCCCAGC TGGTGGGCGA CCTGATCGCC
GGCCTGCTGC AGGTGGCGAT CTACTTCGGC CTGGCGGCGG CGATCGCCAC CGCCATCATC
TACGGCTACA CCCGTTGCGT GCGCAGCACC GCGCTGGTGG TGGCGTGTTC GTTGGTGGCG
GTGGTCTGGC AGCTCGGGCT GGTGGCGGCG CTCGGCTTCG AGCTCGACCC GTATTCGATC
CTGGTGCCCT TCCTGGTGTT CGCCATCGGC GTGAGCCACG GCGCGCAGAA GATGAACGGC
ATCATGCAGG ACATCGGCCA GGGCGCACCC AAGGAGGTGG CCGCGCGCTT CACGTTCCGG
CGCCTGTTCC TGGCCGGCGT GACCGCGCTG GTGGCCGATG CGGTGGGTTT CGGCGTGCTG
ATGCTGATCG ACATCGCCGT GATCCGCGAC CTGGCACTCA CCGCGAGCCT GGGCGTGGCG
GTGCTGATCG CCACCAACCT GATCCTGCTG CCGGTGCTGC TGTCGTACTG CGGCGTCAGC
GCCGCGGCGG CCGAGCGCAG CCTGAAGGCC GACAAGCCCG GCAGCGTCAG CCACTTCGTG
CTCGCAGGGC TGGCGCGTTT CACCGAACGC CGCTGGGCGA CGGTGACGAT CGCCGTCGCC
GCGCTGCTGA GCGTGGGCGG CTACCTCGTC AGCACGAAGC TGCAGATCGG CGACCTCGAC
CCCGGCGCGC CCGAGCTGCG TGCCGACTCG CGCTACAACC GCGACAACGC CTACGTCACC
GGCCACTACG CGCTCTCCAG CGACACCTAC GCGGTGATCG TCAAGACCGA AAAAGAAGGC
TGCCTGAAGT ACGACACCCT GGTCGAGGCC GACCGGCTGG CCTGGACGCT GCAGCAGGTT
CCCGGCGTGC AGACCACCGC CGCGCTGACG CAGGCGGTGC GCCAGATCAC CGCCGGCAGC
TACGAGGGCA ACCCGAAGTG GCTGACCATC GCGCGCAACC AGGACACGCT CAACTACGGC
GCCCAGCAGG CCAGCGTCAA CAACCCGGAT CTGTTCAACA CCGACTGCTC GGTGATGCCG
GTGATCGCCT ACCTGGCCGA CCACCGCGCC GACACGCTCG ATCGGGTCGG CGCCGCCGCC
GCCGACTTTG CCGCCGCGCA CAGCACGCCC GAGCGCCAGT TCCTGCTCGC CGCCGGCCCG
GCCGGCATCG AGGCTGCCAC CAACAGCGTC GTGCGCAAGG CCTGGACGCA GATGCTGCTG
TGGGTCTACG CGGCGGTCAC GGTGCTGTGT TTCATCACCT TCCGCAGCTG GCGCGCGGTG
GTGGTGGCCG TTGTTCCGCT GGTCATCACC TCGGTGCTGT GCGAGGCGCT GATGGTGGCG
CTGGGCATCG GCGTCAAGGT GGCGACGCTG CCGGTGATCG CGCTGGGCGT GGGCATCGGC
GTCGACTACG CGCTGTATCT GCTGAGCGTG CAGCTGCAGC AGCAGCGCGC CGGTGCCACG
CTGATCCTGG CCTACGCGCA GGCGCTGCGC TTCACCGGCA AGGTGGTCGC GCTGGTCGGC
GTGACGCTGG CCGCCGGCGT GGCGACCTGG GCGCTGTCGC CGATCAAGTT CCAGGCCGAC
ATGGGCGTGC TGCTGGCCTT CATGTTCGTC TGGAACATGG TCGGCGCGGT GCTGCTGATC
CCGGCGCTGT CGTACTTTCT GCTGCCCGAA GGCGTGATGG CGCGCCGCCG CGCCAGCGCC
ACGCTCACCC CCGTTGTCAG CGTCTGA
 
Protein sequence
MHAPHDSSAP LPGSDTFDPQ SGSRLERLVF NHRRAVMILC ALLTLLFGAL AASRLTLNAS 
FEKMIPRSHP HIQNYLAHRE DLRGLGNALR IVVENPSGSI DAPAYLDALK KIHDEVFLTP
GVDRAWVKSL WAPGVRWTEV TEEGFRGGPV MPDNYDGSPA AIEQLRGNIA RANLVGNLVG
KDMQSSMIVA PLLDRDPATG ERIDYRQLAQ AIEQIRARHE GPALRLHVIG FAQLVGDLIA
GLLQVAIYFG LAAAIATAII YGYTRCVRST ALVVACSLVA VVWQLGLVAA LGFELDPYSI
LVPFLVFAIG VSHGAQKMNG IMQDIGQGAP KEVAARFTFR RLFLAGVTAL VADAVGFGVL
MLIDIAVIRD LALTASLGVA VLIATNLILL PVLLSYCGVS AAAAERSLKA DKPGSVSHFV
LAGLARFTER RWATVTIAVA ALLSVGGYLV STKLQIGDLD PGAPELRADS RYNRDNAYVT
GHYALSSDTY AVIVKTEKEG CLKYDTLVEA DRLAWTLQQV PGVQTTAALT QAVRQITAGS
YEGNPKWLTI ARNQDTLNYG AQQASVNNPD LFNTDCSVMP VIAYLADHRA DTLDRVGAAA
ADFAAAHSTP ERQFLLAAGP AGIEAATNSV VRKAWTQMLL WVYAAVTVLC FITFRSWRAV
VVAVVPLVIT SVLCEALMVA LGIGVKVATL PVIALGVGIG VDYALYLLSV QLQQQRAGAT
LILAYAQALR FTGKVVALVG VTLAAGVATW ALSPIKFQAD MGVLLAFMFV WNMVGAVLLI
PALSYFLLPE GVMARRRASA TLTPVVSV