Gene Lcho_2161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2161 
Symbol 
ID6163708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2362283 
End bp2362924 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content71% 
IMG OID641664929 
ProductGTP cyclohydrolase II 
Protein accessionYP_001791192 
Protein GI171058843 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00505] GTP cyclohydrolase II 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.00901364 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGTCCG AACCCGCCAC CTGCCTACAG GCCCGCATCG AGCGCGGCGC CAGCGCCCGC 
CTGCCCACGC CGCACGGCGA GTTCACGATG ACGTCGTACT TCGACCTCAC CACGCGCATC 
GAGCACCTGG CGCTGCACGT CGGCGAACTC GCCGGCGAGG CGGTGCTGGT GCGGGTGCAC 
TCGGAGTGCC TGACCGGCGA CATCTTCGGC TCGCTGCGCT GCGACTGCGG CCCGCAGCTG 
CAGATGGCGC TGGCGCGCAT CGCCCAGGTC GGGCGCGGGC TGGTGATCTA CATGCGCGGG 
CACGAGGGGC GCGGCATCGG CATCGACCAG AAGCTGCGCG CCTACACGCT GCAGGACCAG 
GGGCTGGACA CGGTGGAGGC CAACCTGGCG CTGGGCCACC CGGCCGACAG CCGGCGTTTC 
GAGGCGGCGG CGGCGATCCT GCACGACTTC GGGGTGCGTT CGGTCTGCCT GATGAGCAAC 
AACCCGCTCA AGCTGCTGGC GCTGCAGGAG CACGGCATCC GCATCGAGCA GCGCGAGCCG 
CACGAGATCG AGGCCAACCC CGAGAACGCC AGCTACCTGG CCACCAAGCG CGACCGGCTC 
GGGCACCTGC TGACGCCCGC CGCGGCATCA CCGGCGGATT GA
 
Protein sequence
MKSEPATCLQ ARIERGASAR LPTPHGEFTM TSYFDLTTRI EHLALHVGEL AGEAVLVRVH 
SECLTGDIFG SLRCDCGPQL QMALARIAQV GRGLVIYMRG HEGRGIGIDQ KLRAYTLQDQ 
GLDTVEANLA LGHPADSRRF EAAAAILHDF GVRSVCLMSN NPLKLLALQE HGIRIEQREP 
HEIEANPENA SYLATKRDRL GHLLTPAAAS PAD