| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2138 |
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| Symbol | |
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| ID | 6162922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2341231 |
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| End bp | 2342331 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664907 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001791170 |
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| Protein GI | 171058821 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00117321 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCAGG CTTTTTCGCC CATCGCCGCG CGGCCGCCAA CCCGGCGCTC CACCACGCCT
TGGCGCTGGG CGCAACGCAA CCTGTTCGCA GGTGTGCCGA GTTCCTTCGC CACGCTGCTG
CTCATCGCCA GCTTCGCCTG GGCCTTGCCG CAGCTGTGGA TCTGGGGCGT GTCGCACGCG
GTCTGGTCCG GCAACGCCGA GGCCTGCCAG GCCGCGCGTG GCAGCGGCGC CTGCTGGGGC
GTGATCACCG AAAAGCACCG GCTGGTGATC TTCGGCCGCT ACCCGTACGA CGCCCAATGG
CGCCCGCTGA TCGCCACGCT GGCGATGTTC ACGATGCTCG TCATCAGCTG CGTGCGCCGT
TGCTGGCGGC CCTGGCTGGT GCCGGCCTGG GCGGGCGTGC TGGCGGTTTT CTTCGTGCTT
ATGGGCGGCG GCTTCGGTCT CGCCAAGGTC GGCACCGACC AGTGGGGCGG CCTGCCGCTG
ACCGTGACGC TGGCCACGCT GTCGATCGTG CTGGCGTTTC CGATCGCGGT GGCGGTGGCG
CTGGGCCGGC GCTCCAAGCT GCCGGCGATC CGCTCGCTGT GCACGCTCTA CGTCGAGCTG
ATCCGCGGCG TGCCGCTGAT CTCGGTGCTG TTCATGGCGA GTTTCATGTT CCCGCTGCTG
ATGCCCTCGG GCACCTCGCC CGACGTGCTG CTGCGCGTGC TGGTCGGCAT CACGCTGTTC
TCGGCCGCCT ACATGGCCGA GATCGTGCGC GCCGGCCTGC AGGCCATCCC CGCCGGACAG
CTCGAAGCGG CCGCCTCGGT CGGCCTGGGC TGGTGGCAGA CCCAGCGCCT GGTGGTGCTG
CCGCAGGCGC TGGCGGCGGT GGTGCCCTCG CTGATGAACA ACTTCATCGC GATCTTCAAG
GACACCTCGC TGATCACCGT GGTCAGCCTC TACGAACTCA CCGGCTCGCT CGGCCTGGCG
CTCAGCGGCG ACCCGGTCTG GCGGCCGTTC AAGATCGAGG GCTACCTCTT CATCACCGCG
ATCTACTTCG TGATCTGCTT TGCGATGTCG CGCTACAGCC TGTGGGTCGA AGCCCAGCTC
GGCCGCAGCC GCAACCGTTG A
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| Protein sequence | MSQAFSPIAA RPPTRRSTTP WRWAQRNLFA GVPSSFATLL LIASFAWALP QLWIWGVSHA
VWSGNAEACQ AARGSGACWG VITEKHRLVI FGRYPYDAQW RPLIATLAMF TMLVISCVRR
CWRPWLVPAW AGVLAVFFVL MGGGFGLAKV GTDQWGGLPL TVTLATLSIV LAFPIAVAVA
LGRRSKLPAI RSLCTLYVEL IRGVPLISVL FMASFMFPLL MPSGTSPDVL LRVLVGITLF
SAAYMAEIVR AGLQAIPAGQ LEAAASVGLG WWQTQRLVVL PQALAAVVPS LMNNFIAIFK
DTSLITVVSL YELTGSLGLA LSGDPVWRPF KIEGYLFITA IYFVICFAMS RYSLWVEAQL
GRSRNR
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