Gene Lcho_2137 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2137 
Symbol 
ID6162921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2340039 
End bp2341070 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content68% 
IMG OID641664906 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_001791169 
Protein GI171058820 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4597] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00211698 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGACG AGACCGCCGC GCCGCGCCGA CCCCCTGCGC GGCGGCGCAG CTGGGCGTGG 
TCCAACCCGG CCACGCGTGG GCTGGTCTAC CAGCTGCTGA TGCTGGCGCT GGTGGCCGTG 
GTGGTGGGCT GGCTGGTGCA CAACACGCTG GCCAACATGG CGCTGCGCGG CATCCGCAGC 
GGCTGGGATT TTTTGACCCA GACCGCCGGT TTCGACATCG GCGAGAGCCT GATTGCGTTC 
GAGTCGATCG ACCCGTACTG GCGCGCGTTC CTGGTCGGCC TGCTCAACAC GCTGCGGGTG 
GCGCTGATCG GCATCGTGCT GATCACGCTG CTGGGCACCG CGCTCGGCGT GGGGCGCTAC 
TCGCGCAACG CGCTGGTGCG CGGGCTCTGT TATGGCTATG TCGAGCTGTT CCGCAACGTG 
CCGATCCTGG TCCAGCTCTT GATCTGGTAC CTGCTGATGG TCGAGTTCCT GCCCGAGGCG 
ATGGCGCCGC TCGATTGGGG CGGGCGGGTG TTTCTCAGCA AGTCGGGGCT GTCGCTGCCG 
TGGCTGGCGC ACAGCGCCGA GGCGGGCTGG TCATGGAGCA TTCCGGAGCC GGGCGCCTTT 
GTGCTCGAAG GTGGCGTGAC GCTGTCGCCC GAGTTCCTCT CGGTGCTGCT GGGGCTGACC 
TTCTACACCT CGTCGTTCGT GGCCGAGGTG GTGCGCGCCG GCATCGCCAG CGTCCCGCGC 
GGCCAGACCG AAGCCGCGCA CAGCATCGGC CTGAGCCGCG CCAAGACGCT GCGGCTGGTG 
GTGCTGCCGC AGGCGCTGCG GGTGATCATT CCGCCGCTCA CCAACCAGTA TCTGAACCTG 
ACCAAGAACT CGTCGCTGGC GGTGGTGATC GGCTATCCGG ACGTGGTCTC GATCGCCAAC 
ACCGCGCTCA ACCAGACCGG CCGCGCGGTC GAATGCATCG CCATCATCAT GGCCGTCTAC 
CTGAGCACCT CGCTCGGCAC CGCCGCGCTG ATGAACGCGT ACAACCGCCG CGTGGCGATC 
CGGGAGCGGT AG
 
Protein sequence
MSDETAAPRR PPARRRSWAW SNPATRGLVY QLLMLALVAV VVGWLVHNTL ANMALRGIRS 
GWDFLTQTAG FDIGESLIAF ESIDPYWRAF LVGLLNTLRV ALIGIVLITL LGTALGVGRY 
SRNALVRGLC YGYVELFRNV PILVQLLIWY LLMVEFLPEA MAPLDWGGRV FLSKSGLSLP 
WLAHSAEAGW SWSIPEPGAF VLEGGVTLSP EFLSVLLGLT FYTSSFVAEV VRAGIASVPR 
GQTEAAHSIG LSRAKTLRLV VLPQALRVII PPLTNQYLNL TKNSSLAVVI GYPDVVSIAN 
TALNQTGRAV ECIAIIMAVY LSTSLGTAAL MNAYNRRVAI RER