Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2129 |
Symbol | |
ID | 6161622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2328259 |
End bp | 2331249 |
Gene Length | 2991 bp |
Protein Length | 996 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641664898 |
Product | FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
Protein accession | YP_001791161 |
Protein GI | 171058812 |
COG category | [C] Energy production and conversion |
COG ID | [COG1251] NAD(P)H-nitrite reductase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0052941 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCGAACC CGACCGGGGC TGGTGCCGCC GCATGGCAGC CGTTTCCGAA TTTCATGCAG ATGAACAGCT ACCTGCCCGG CTGGGCCTGG CGGCTGCTGC GGCTGTGCAG CGTGCTCGGC GCGCTGGCCG TGGCCGGCCT GCTGGCGCTG CGGCCCGAGC AGGGCCTGCC GCTGTTCTGG GGCCTGATCG TGCCGGTGCT GCCGCTGGTG TTCATGCTGA CGCCGGGCAT CTGGCGCAAC GTCTGCCCGC TGGCCAGCAG CAACCAGGCG CCGCGCCGGC TCGGGCTGAT CAAGAAGATC AACCAGAAGA CGCTCGCCAC CGGCGCGGCG TTTCCGATCG GTATCGGCCT GTTCATCGCC GCGATCCTGG CGCGCAAGCT GATGTTCAAC ACCAGCGGTG TCGCCACCGC CGCCCTGATC GTCGGCGCGA TGGTGATGGC GTTTGCCGGC GGCATCGTCT TCAAGGGCAA GAGCGGCTGG TGCAGCAGCA TCTGCCCGCT GCTGCCGGTG CAGCGTCTCT ACGGCCAGAC CCCGTTCCTG AAGATCGCCA ACACCCAGTG CGAGCCGTGC GTGGGCTGCG CCAAGAACTG CTACGACTTC AACCCCGGCT CGGCGTATCT TGCTGACCAG TACGACGCCG ACCCGAGCTA CCGCGACTTC CGGCGCTTCT TCGCCGGCCT GTTTCCGGGC CTGATCCTGG GCTTCTACCT GGTGCCCGGC ACCGCGCAGA TCGGCGCCGG CGCGGTGGTG CTGCAGATGC TGCTCTACAT GGCCAGCAGC CTGACCGTGT TCACGCTGCT CGACCTGCTG CTGAAGTCGA CCCGCAACCG CCTGCCGGTG GTGTTCGCGG CGCTGGCGAT CAATGTCTAC TACTGGTTCG CGGCGCCGAT CGTGCTCAAC ACGCTGCAGC AGCTGGGCGC GCCGATCGAC CTGACGCTGG TCGGCGCCGT GCGCGCCGCC GTGGTGATCG CCAGCCTGGT GTGGATCGCA CGGTCGATCC AGGCCGAGCG ACTGTTCCTG AACGAGCAGG TGCGCCGTGG CCAGGGCGGC GAGATCCATC TCGCGCCGGT GGTGGTCGAG ACCGTGCGCC TGCACCGCAA CATCGTGCCG CGCCGGGTCG ATGTCGAGCC GGTGGCATCG GACGCGCCGG CCGCCAACTC GGCGCGCATC CAGGGTGGCG ACACCCAGCC CGGCGCGCTG GCGCCGCTCG AGGCAGCGCC GGCCGATGCC GTGGCACGCC CCCCGGCCGC TGCGGCACCC AAGGCCGGTT CGCGCCCCGA ACTGCGCATC GAGCCCGAGG GCCGCTGCGT GCCGCTGAAA AAGGGCGCCA GCCTGCTCGA CACCCTCGAG GGCTGCGGCG CGGCGATCCA GGCCGGCTGC CGCGCCGGCG CCTGTGGCGG CGACCCCATC GCGATCACCG GCGGCGCCGA TTGCCTGGGC CCGATCGGCG ACACCGAGCG CGCGACGCTG GCCCGCCTGG GCCACGCGTC GAACACCCGC ATGGCCTGCA TGGCGCGGGT ACGCAATGCC GGTACCGTCA CGGTCGAGCT CAAGCCGCAT GCCGTCGATG CGCCCGGCGC TGCGCCTGCG CCCACACGCC ACGCCGCACC GGCGGCCGTG TCGGTCGTGG CGTCGGTCGT GGCGCCGGTG GTAGCCAGGC ACGACCGCTC GATCCGCAGC GTCGTCATCG TCGGCAACGG CGTGGCCGGC CTGACCGCGG CCGAGCACGT GCGCCGCCAT CACCCGGATT GCGAGATCCA CCTGATCGCC CGCGAGCGTT ACCTGCCCTA CAACCGCATG GCGGTCAGCG CGCTGATCAA CCAGCGCTCG GGCATGCAGG GCATGGGCCT GAAGCCCGAC GCCTGGTACG CCGAACAGCG CATCACGCAC TGGCTCAACA CCCGCGCCAC CGACGTCGAC ACCACCGGCC GCCAGGTGCA GCTGGCGACC GGCGAGACGC TCGGCTACGA CCGCCTCATC CTGGCCAACG GCAGCCAGGC CTGGATGCCG CCGGTGGAGG GTTTCGGCAT CGCCGGCTCC TTCCTGCTGC GCCAGGCCAA CGACGCGATG GCGATCCGCG CCTTCGTGCA GCGCCACGGC GCGCGCCACG CGGTGGTGGT CGGCGCCGGC CTGCTCGGGC TGGAGGCCGC GGCGTCCTTG CGGCAGCTGG GCCTGGGCGT GCAGGTGCTG AGCCTGAACG AGCAGGTGCT CGATCGCCAG ATCGACCGCG CGGCCAGCGA GTTGGTGGTC GCGCACCTGA GCGGCCAGGG CATCGAGCTG GTCGGCAACG CCAAGCTGCG CCGGGTGGTG CGCAGCGCGG GCCGCATCAG CGCCATCCGG CTCGAGGACG GCCGCGAGCT GCCCACCGAA CTGCTGGTGG TGTGCGCCGG CACCCGCGCC GAGCTGACGC TGGCGCACGC CGCCGGCCTG GCCACCGGCC GCGGCATCAC GGTGGACGCG CAGATGCGCA CCAGCGCCGA ACACGTCTAC GCGGCCGGCG ACGTGGCCGA GTTCGAGGGC GAACAGTTCG GCCTGTGGGC GATCGCCGTC GCGCAGGGCG AGGTGGCGGC GCGCAGCGCG CTCGGGCTGG CCGCCCGCTT CGAATCGATC CAGCCGGTGA CGGCGCTCAA GCTGCGTGGC ATCGAGGTGC GCAGCGCCGG TGCGGCCGGT GCCGGCGGGG CCGGCCAGAG CGAGCTGCTG TGCGCCGGTT CGCTGGCCGG TGACGAACCC GACGAGGCCG ACGCCGGGCC TGGCTACTGC AAGCTGGTGG TCGAGGAACA CGCCGGGGGC GACCGCCTGA TCGGCGTCGT GATCGTCGGC GCGCACGAGA TCGGCGACGA GCTGCTCGAT GCGGTCAAGC GCCGTGCCAG CCTGGCCTCG CTGCAGTCGT TGCTCGCCGG CCACCGCTGG CTGCTGCAGC CGGCCGAGGT GGCCCAGGCC CGGGTGGCGC CGACCCGGGG GGCGCCGACC GCGGTTCGGC GTGTCGGCTG A
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Protein sequence | MSNPTGAGAA AWQPFPNFMQ MNSYLPGWAW RLLRLCSVLG ALAVAGLLAL RPEQGLPLFW GLIVPVLPLV FMLTPGIWRN VCPLASSNQA PRRLGLIKKI NQKTLATGAA FPIGIGLFIA AILARKLMFN TSGVATAALI VGAMVMAFAG GIVFKGKSGW CSSICPLLPV QRLYGQTPFL KIANTQCEPC VGCAKNCYDF NPGSAYLADQ YDADPSYRDF RRFFAGLFPG LILGFYLVPG TAQIGAGAVV LQMLLYMASS LTVFTLLDLL LKSTRNRLPV VFAALAINVY YWFAAPIVLN TLQQLGAPID LTLVGAVRAA VVIASLVWIA RSIQAERLFL NEQVRRGQGG EIHLAPVVVE TVRLHRNIVP RRVDVEPVAS DAPAANSARI QGGDTQPGAL APLEAAPADA VARPPAAAAP KAGSRPELRI EPEGRCVPLK KGASLLDTLE GCGAAIQAGC RAGACGGDPI AITGGADCLG PIGDTERATL ARLGHASNTR MACMARVRNA GTVTVELKPH AVDAPGAAPA PTRHAAPAAV SVVASVVAPV VARHDRSIRS VVIVGNGVAG LTAAEHVRRH HPDCEIHLIA RERYLPYNRM AVSALINQRS GMQGMGLKPD AWYAEQRITH WLNTRATDVD TTGRQVQLAT GETLGYDRLI LANGSQAWMP PVEGFGIAGS FLLRQANDAM AIRAFVQRHG ARHAVVVGAG LLGLEAAASL RQLGLGVQVL SLNEQVLDRQ IDRAASELVV AHLSGQGIEL VGNAKLRRVV RSAGRISAIR LEDGRELPTE LLVVCAGTRA ELTLAHAAGL ATGRGITVDA QMRTSAEHVY AAGDVAEFEG EQFGLWAIAV AQGEVAARSA LGLAARFESI QPVTALKLRG IEVRSAGAAG AGGAGQSELL CAGSLAGDEP DEADAGPGYC KLVVEEHAGG DRLIGVVIVG AHEIGDELLD AVKRRASLAS LQSLLAGHRW LLQPAEVAQA RVAPTRGAPT AVRRVG
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