Gene Lcho_2128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2128 
Symbol 
ID6162717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2327552 
End bp2328163 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content70% 
IMG OID641664897 
Producthypothetical protein 
Protein accessionYP_001791160 
Protein GI171058811 
COG category[S] Function unknown 
COG ID[COG3803] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.00403013 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTGCAG ATTCACTCGC GTCACCCGGG CGCCCGGCCG AGGCGCAGGC GGTGCTCGAT 
TTCTGGTTCG GCCCACCCGG CGATCCCGGC CATCTGCAGC CCCGGCGCCA GTGGTTCGAG 
AAGGACGCCG CCTTCGACGC CCTGATCGGC ACGCGTTTCG GCCCGCTGAT CGAGAGCGGC 
CTGGCCGGTG AACTGATGTC CTGGGCCGAC GAGACCGGCT CGGCGCTGGC CGAGATCATC 
GTGCTCGACC AGTTCCCTCG CAACCTGTTC CGTGGCACCC CGCGCGCCTT TGCCGGCGAC 
AGCCTGGCAC TCGAGGCGGC CACCCGGCTG GTCAAGCGCG GCGCCGACCG CAGGCTCAGC 
GGCGTGCAGC GCCAGTTCGT CTACCTGCCG TTCGAGCATG CCGAGTCGAT GGTGGCGCAG 
CACTGTTCGA TGGCGCTGTT CGAGCAGCTC GGGCGCGACG AACCCGGCCT CGCCGGCCTG 
CTCGACTGGG CCCGGCGCCA TCACGACATC GTGGCGCGCT TCGGTCGCTT CCCGCATCGC 
AACCCGATCC TCGGGCGTGT CAGCACGGCC GACGAGATCG AGTTCCTGAA GCAGCCCGGT 
TCGGGGTTCT GA
 
Protein sequence
MSADSLASPG RPAEAQAVLD FWFGPPGDPG HLQPRRQWFE KDAAFDALIG TRFGPLIESG 
LAGELMSWAD ETGSALAEII VLDQFPRNLF RGTPRAFAGD SLALEAATRL VKRGADRRLS 
GVQRQFVYLP FEHAESMVAQ HCSMALFEQL GRDEPGLAGL LDWARRHHDI VARFGRFPHR 
NPILGRVSTA DEIEFLKQPG SGF