| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2126 |
|---|
| Symbol | |
|---|
| ID | 6162715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2325796 |
|---|
| End bp | 2326815 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641664895 |
|---|
| Product | dihydrouridine synthase DuS |
|---|
| Protein accession | YP_001791158 |
|---|
| Protein GI | 171058809 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0242432 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGGGC TGCTCGACGC GCCGTTGCGC GACATCCTGA CGCGTGTGGG CGGCGTCGAC
CGCTGCGTGT CGGAGTTCAT CCGTGTCACC GGCACGCTGC TGCCCGAGCG CGTGTTCTTG
CGCATCGTGC CGGAGCTCGA ACACGGTTGC CGCACGCCGT CGGGCGTGCC GGTGCGGCCG
CAGCTGATGG GGTCCGACGC CGCCTGCCTG GCCGACAACG CCGCCCGGCT GGCGCAGATG
GGCGCCGAAG GGGTCGACCT GAACTTCGGC TGCCCGGCCC AGGTGGTGAA CCGCCACGGC
GGCGGCGCGG CGCTGCTGCG CGAGCCGCAG CGGCTGGCGG CGATCGTCGC GGCGGTGCGG
CGCGCGGTGC CGGCGCACCT GCCGGTGTCG GCCAAGATGC GGCTCGGTTA CGACCATGAC
GAACACGCGG TCGACTGCGC CCAGGCCCTG GTGGACGGCG GTGCCGCCGA GCTGGTGGTG
CACGCGCGCA CCAAGGCGCA GGGTTATCGC CCGCCGGCCT GGTGGGCCAA GGTGGCCGAG
GTGCGCGCCG CCGTGCCGGT GCCGGTGGTC GCCAACGGCG AGATCTGGAA TGCCGACGAC
GCGCTGCGCT GCCGCCGCGA AAGCGGCTGC GACGACCTGA TGCTCGGCCG CGGCATGGTG
GCCGACCCGG GCCTGGCGCT GGCGATCATC GCCCGCGGCC GACCGGTCGA CGATGCGACG
CAGACCGGCG TGCCGTGGGC CGACCTGCAA CGGCTGCTGC AGCTGTTCTG GGCGCTGAAC
GCGCCGCGCA TGAGCTCGCG CGACCGCATC GGGCGGGTCA AGCAGTGGCT CAACTTCCTG
CGCCGCGTCC ATCCGGGCGC CGAACTGGCC TTTGCCGAGC TGCGCACCCT CAGCGATCCG
ACCGTCGTCG AGGCCTGCCT GCAGCGCGGC TGGGGCGATG CACACGCCAC GCCGGCCGTG
CCGCAGGCCG GTCCGGGCGC CGAGCGGCCG TTGTTACAAC AGCTCGCAAC GGCGGCTTGA
|
|---|
| Protein sequence | MEGLLDAPLR DILTRVGGVD RCVSEFIRVT GTLLPERVFL RIVPELEHGC RTPSGVPVRP
QLMGSDAACL ADNAARLAQM GAEGVDLNFG CPAQVVNRHG GGAALLREPQ RLAAIVAAVR
RAVPAHLPVS AKMRLGYDHD EHAVDCAQAL VDGGAAELVV HARTKAQGYR PPAWWAKVAE
VRAAVPVPVV ANGEIWNADD ALRCRRESGC DDLMLGRGMV ADPGLALAII ARGRPVDDAT
QTGVPWADLQ RLLQLFWALN APRMSSRDRI GRVKQWLNFL RRVHPGAELA FAELRTLSDP
TVVEACLQRG WGDAHATPAV PQAGPGAERP LLQQLATAA
|
|---|
| |