| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2097 |
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| Symbol | |
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| ID | 6160875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2291781 |
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| End bp | 2293682 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641664866 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001791129 |
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| Protein GI | 171058780 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACA TCAACCCCCA TGTCGTCGGG CTGATCGCCT TGGCTTGCCA CTTGGCAATC
ATGCCTGCTA GCGCGGTGGC ACAGGTCACC GATCCGCTCA AGGATGCGGC GCAACGAGCG
ATTTCCACCA ATCCAGAGGT CACGGCCCGT CTCAATGCGT TCCGCGCTGC GGTCGACGAG
GTCGATGTGG CCAGGGGCGG TTTCCTGCCT CGTGTCGATC TGTCCGCGGA AGCGTCACGG
ACCCGTGATC GGATCGAGAA CGGTCGCACG CCGGCCAGCC AGTCCATGAA CAGCACGGGC
ATCGCGTTGA CGGCCACCCA GTTGCTGTGG GACGGCATGG GCACGCGCAG CCAGGTTCAG
CGACTTGACC ACGCTCGCCT GGTGCGGTAT TTCGAGTTCA TCGAAAGCAG CGAGCAGGCC
GCCCTCGAAA GCACGCGTGC CTACGCCGAC GTGGCGCGCG CGCGTCGCAT GGTGAAACTC
GCCGAGGACA ACTACGTGCA GCACCGGCAG GTGTTCGACC AGATCCAGTC GCGTGTCAAG
GCAGGCGTCG GTCGAGGGGT CGACCTCGAG CAGGTCGGCG CACGACTGGC CTTGGCCGAA
TCCAATCTGG CGACCGAGTC GTCGAATCTG CATGACGTCA CCGAACGGTA TCGGCGCATC
GTCGGTACGG TTCCGCCCAG CCAACTGCCC TTGACCGCCA ATCTGGATCG CGGTCTGCCG
GCGTCTGCCG CCACGGCGCT CGATCAGACC GCCAAGCGCA ATGCGATGGT CGCGGCTGCG
GTCGAGAACG TCCGCTCGGC ACAATCGCAG AGCAAGGAAC GCGACAGCGC CTTCCAGCCC
CGCGTCGAGG CGCGGCTGCG CAGTGGCGCA GGCAACAACC TCGACGGCGT TGCCGATCAG
AAGCGCGAAA CCAGCGCTGG CGTTTTCCTG AACTGGAACC TCTACAACGG CGGGTCGGAT
CAGGCGCGTG TGCGTCAATA TGCCAACCTG CTCAACCAGG CTGGCGACGC CCGCGACAAG
GCCTGCCGGG ACGCGCGTCA GACCTCGGCC ATCGCCTACA ACGATGTCCG CATGCTGACC
GAGCAGATCT CGTATCTGGA TCGCAATGTG TTGTCGAGCG AAAAGGCCCG GGACGCCTAT
CGCCAGCAGT TCGACATCGG TCAGCGCAGC CTGCTTGACG TGCTCAATGC CGAAAACGAG
CTCTACGCAG CCCGTCGCGC CCTGACCGCC GCCGAGCACG ACCTGGTCGT GGCCAAGGCG
CGCAGCCACG CGGCCTCCAG CAGCCTGGTG GCCGCCCTGG GCCTCACGCG TGCGGGCAAC
GCCGCCGACG AACCGGATGA TGGTCGTTAC TGGCAAGCCG GCGATGACGC GGCACAGCGG
TGCCCGCTGA GCGCCACCGA ACTCGCTCTG CTGACGAAGT CGGATCTGGA TGCCCGTGCC
CGGCAGGACC AGGGCGCCAC GGCTTCACTG GCCGCACCGG TGCCTGCGTC GTCGATCGCC
GTGCCGGCTG CCAACGGAGC CGCTCTTGCT GCTGCCGCCC AGAAGTCGCC GCGGCCTGAT
CCGCCGATTT CGTCGCCGGT GTCGCAGCGT CTGCTCGACT GGGTGGCGGC ATGGTCGACC
AAGGACGTGA CGCGCTACGT CAGCTTCTAC GACGCCAGCT TCAAGCCGGC CGGCGTGTCG
CGCAACACCT GGTTCGCCAA TCGCACCAAG CTGCTCAAGA AGGACGGGCC GATCGAACTG
AAGATCAGCA ACGTACAGCG CCGTTCGGTG TCGCCCACGG TGGTTGAAAC CCGCTTCGAG
CAAACCTATG CGTCGAAGGG TTTCAAGGAC AAGACCCAGA AGGTGCTGAC CTGGAAACGC
GTCGGAACCG AGTGGTACAT CGTCAAGGAA AGCAACCGCT GA
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| Protein sequence | MKHINPHVVG LIALACHLAI MPASAVAQVT DPLKDAAQRA ISTNPEVTAR LNAFRAAVDE
VDVARGGFLP RVDLSAEASR TRDRIENGRT PASQSMNSTG IALTATQLLW DGMGTRSQVQ
RLDHARLVRY FEFIESSEQA ALESTRAYAD VARARRMVKL AEDNYVQHRQ VFDQIQSRVK
AGVGRGVDLE QVGARLALAE SNLATESSNL HDVTERYRRI VGTVPPSQLP LTANLDRGLP
ASAATALDQT AKRNAMVAAA VENVRSAQSQ SKERDSAFQP RVEARLRSGA GNNLDGVADQ
KRETSAGVFL NWNLYNGGSD QARVRQYANL LNQAGDARDK ACRDARQTSA IAYNDVRMLT
EQISYLDRNV LSSEKARDAY RQQFDIGQRS LLDVLNAENE LYAARRALTA AEHDLVVAKA
RSHAASSSLV AALGLTRAGN AADEPDDGRY WQAGDDAAQR CPLSATELAL LTKSDLDARA
RQDQGATASL AAPVPASSIA VPAANGAALA AAAQKSPRPD PPISSPVSQR LLDWVAAWST
KDVTRYVSFY DASFKPAGVS RNTWFANRTK LLKKDGPIEL KISNVQRRSV SPTVVETRFE
QTYASKGFKD KTQKVLTWKR VGTEWYIVKE SNR
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