| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2094 |
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| Symbol | |
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| ID | 6160872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2284584 |
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| End bp | 2288870 |
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| Gene Length | 4287 bp |
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| Protein Length | 1428 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664863 |
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| Product | outer membrane adhesin like proteiin |
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| Protein accession | YP_001791126 |
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| Protein GI | 171058777 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCGA AATCATCTTC TTCCGAACTG GCTGCCAGTC TGGCGGCCAA GGCCGCCCAG
ATCCCCAGCC TGCGCGCGGT CCGGCTGGAA GCCGATTACG TTCCCGCCCG CCTGCCGTCC
GGCAAGGTGA CCGGCATCTG GGGCGAAGCG TTCATCCGCA CACCCGATGG CGATCTGCGC
CCGCTGGTGG TCGGCGACGA AATCCGCAAG GGTGACGTCA TCATGACGAC CCAGAACGGC
ATTGTCGAGA TCGACGATGC CGGCACCCGC CTGGCCCGCT TCCCCGGCAC CGATGCGCTG
GAGCAGATCC TCACCGATCT GCCGCCGACC GGCGCCGGCC TGAGCGGCGG CGACCCGGGT
TCCCTGCTGC CGGGTGTGCG GGTCGATCGC ATCAACGAGT CGGTCGACGG CCAGGCATTC
GCCTTCGACG CCGCCGAGCG TGGCGAGGGC CAGGCCTTCA TCGCCGCGAC CGACGAAGTC
CTGATCCCCA CCGTGGTGTC CGTGACCCCC GTCGCGCCCG ACTCCACCGG TGACGGCGTG
CCCGACGTTA TCGAAGGTAC CGGCGCCGGC AACGGCAATG CGGTGAGCTA CACCGTGACG
CTGTCGAGCG GCGCCAGCGA GCCGTTCACG TTCAGCTTCG GCGTGACGGG CACCGGCACC
AACCAGGCCG ATCCGGTCAG CGACCTGGCG CCGGCCCTCA CCTTCACCAA CGGCGTGGTT
CTCAACGCCG ACGGCAGCAC CATCACCGTG CCGGCCAACG TGCAGAGCTT CTCGGTCACG
ATCGTCACCA ACCCGGACAC GATCGACGAA GAGAACGAGA CGTTCAACGT CAGCATCGGT
GGTGTCTCGG GCACGGTCAG CATCATCGAT GACGACGCCA TCGTGGTGAT CGACATCGAC
GGACCGGGCG CGGGCAACGC GCGCCAGTTG AACTACACCG AAAACGACGC CGCGTCGCCG
ATCGCCCCGG CGATGACCCT GGCCGATCCC GACAGCAACA TCGTCAGCCG CGCCACCGTC
AGCATCACCG GCGCCTTCAC GGTCGGCGAG GACGTGCTGG CGTTCACCGC GGTCAACGGC
ATCGCCAGCA ACTACGTCGC CGAGACCGGT GTCCTCACCT TCACCGGCAC GGCCACGCTG
GCGCAGTACC AGACGCTGCT GCAGTCTGTG ACCTACTTCA ATCCGAGCGA GAACCCGACC
GCCACGCCGC GCACCGTCAG CTTTGTCGTC TACGACGAGA TCGACCGGCC CAGCGTGCCG
GCCCTGGCCA CGGTCAACGT GATCCCGGTC AACGACGCAC CGACCAATCT GCCGGTCGTG
CTGGCCGCGA TCGCCGAAGA CAGCGGTGTG CGCGTGATCA CGCAGGCCGA GCTGCTGGCC
AACGCCGCCG ACGTCGACAA CACGACCCTG AGCGTCGTCG GCCTCACGGC CAGTTCCGGC
ACGCTGGTGG ACAACGGCAA CGGCACCTGG AACTACACGC CGGCACTGAA CGACGACACG
GCGGTCAGCT TCACGTATTC GGTCAGCGAC GGCAGCCTGA GCGTCGCCGG TTCGGCCGCG
ATGGACATCA CGCCCGTCAA CGACGCGCCG GTCAACACCC CCGCGGTGCT GGCGCCGATC
GCGGAAGACA GTGTCCCGCG TGTCATCACG CAAGCCGAGT TGCTGACCAA CGCGTCCGAC
GTCGACAGCC CCGCGCTGAC CGCCGAGAAC CTCGTCATCA CCGCGGGCGG CGGCACGCTG
GTCGACAACA ACGACGGCAC CTGGACCTAC ACCCCGGCGC CCGACGACGA CACCACCGTC
AGCTTCGACT ACACCGTCAC CGACGGCAGC CTGTCGGTTC CCGGTTCGGT GACGCTCGAC
ATCACGCCGG TCAACGACGC GCCGGTCACG ACGCCGGTCG TGCTCACCGC CATCGCCGAG
GACAGCGTCC CCCGCGTCAT CACGCAGGCC GAACTGCTGG CCAATGCCAG CGACATCGAC
AGCAACACCC TCACCGCGAC GGGCCTGACC ATTGCCGCCG GTGCCGGTTC TCTGGTCGAC
AACGGCAACG GCACCTGGAC CTACACGCCG GCGTTGAACG ACGACAGCAG CGTCAGCTTC
AACTACACGG TCAGCGACGG TGCCTTGTCC GTGCCGGGCA CGGCCACGCT CGACATCACG
CCCGTCAACG ACGCGCCGGT CAACACGCCC GTCACGCTGG CGGCGATCGC CGAAGACAGC
GGCGCACGCA TCATCACGCA GGCCGAGCTG CTGGCCAACG CGACCGACGT CGACGGCCCC
GCACTGACCG CCGCCGGCCT CACCATCACC GCCGGCAACG GCATCCTGGT CAACAACAAC
GACGGCACCT GGACCTACAC GCCGGCGCCC AACGACGACG GAGCTGTCAG CTTCAGCTAC
ACGGTCAGCG ACGGCAGCCT GTCGGTTCCC GGCTCCGCCG CGATGGAGAT CACGCCCGTC
AACGACGCGC CGGTCACCAC GCCGGTCGTT CTGGCCGCCA TCGGCGAAGA CAGCGGCGCG
CGCATCATCA CGCAGGCCGA ACTGCTGGCC AATGCGACCG ACGTCGACAG CACCACCCTC
ACCGCGACAG GCCTGACCGT TGCCGCCGGC GCCGGTTCTC TGGTCGACAA CGGCAACGGC
ACTTGGACCT ACACGCCGGC ATTGAACGAC GACAGCGCCG TCAGCTTCAA CTATTCGGTC
AGCGACGGCG CCTTGTCCGT GCCGGCCACG GCCACGCTCG ACATCACGCC CGTCAACGAC
GCCCCGACCA ACACACCGGT CACGCTGGCC TCGATTGCCG AAGACAGCGG GCCCCGCACC
ATCACCCAGG TCGAACTGCT GGCCAACGCT GCAGACATCG ACGGCCCCGC GTTGACCGCG
TCCGGTCTTG CGATCGCCAC CGGCAACGGC ACGCTGGTGA ACAACAACGA CGGCACCTGG
ACCTACACGC CGGCACCCAA CGACGACACC GCCGTCAGCT TCAACTACAC CGTCAGCGAT
GGCAGCCTGT CCGTCGGGGG CTCGGCGTCG ATGGACATCA CGCCGGTCGA CGATGCGCCG
GTCAACACCC TGCCGGATCC GACCACCAAT CTCGACGGCG TGACGACCAA CGAAGACACG
CCGCTGTTCT TCTCGGTCGC CAACGGCAAC GCCATCACCG TGTTCGACGC CGACATCGTC
AACGACGCCG GCACCCTGAC CACGACGATC AGCGTGGCAC AGGGCACGTT CACGCTCGGC
AGCACCAACG GTGTCACCGT GTCGGGCAAC GGCAGCAGCA GCGTCACGGT CAGCGGCACG
CCGACGGCGA TCAATGCCGC TCTCAACGGT GCCAGCTACC GCAACGTGGC GGACTTCTTC
ACGCACAACA GCAATGGCGG GTTCATCGAC AGCGCCGGCA TCGGCCTGAC GGTCACCACC
ACCGACAGCA CCAATCTGCC GGACACCGAC AGCACGAGCC TGGTCGTCAG AGCCGTCACG
GACGTGCAGA TCGTCACGCG GGTCACGAAC GAAGGTCAGG CCACCACGCC GTTCACGTTG
GCATCCCTGG TCAATGTCAA CGATCCGGGC AGCGGTTTTG AGGGCGCCGG CCCGGCGATC
ACGGCCATCA ACGGCACGGC GGTCGCCGCA GGCGGCAGCG TGACGGTCCT CAACGGCGTC
GTCACCTTGA CCGGCGACCA GTCACTGGTG TTCACGCCGA ACGCGGGCTT CACCGCGACG
GCCGAAGATC CGGCGTCGTT CACCTACACG GTGGCATCGG GCGGGCGCAC CGAGACTGCA
GCATTTTTCG TGCAGGTCGA CCCGATCGCC CTGCCCGTCC AGGCCTCGCC CGGCGTGGCG
GCAAGCAGCG CCGAATCGAT CCAGTCGATC AATGCGGCCA GCACGTCGCC AACCCAGTCG
AGCGTCGACG TGTTCAACGG CAGTGTCGGC AGTGACGTGT TCGCCTGGCA CCTCGGCGAC
GCCGGCACGG CGGGTTCCCC GCGCGCCTAC ACCGTCAACG ACTTCGACGC CGCGCCCGCC
AGCGCGGGCG GCGACGTGCT GGATCTGCGC GATCTGCTGG TCGGCGAGAA CGCCGACAAC
CTGGGCGCCT TCCTCGATTT CTCGAAGTCG GGTGTCGACA CCGTCATCAG CATCAGTTCG
ACCGGCAGCG GTGCCGCCGA TCAGACCATC ACCCTCACCA ACCTCGATCT GGCCGCGACC
ATCGGCCTTG CACCCGATGC GAGCGAAGCG CAGATGATCA CGGCGCTGAT CAACCAAGGC
AAGCTGCTGG TCGACACGGC CGCCTGA
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| Protein sequence | MAAKSSSSEL AASLAAKAAQ IPSLRAVRLE ADYVPARLPS GKVTGIWGEA FIRTPDGDLR
PLVVGDEIRK GDVIMTTQNG IVEIDDAGTR LARFPGTDAL EQILTDLPPT GAGLSGGDPG
SLLPGVRVDR INESVDGQAF AFDAAERGEG QAFIAATDEV LIPTVVSVTP VAPDSTGDGV
PDVIEGTGAG NGNAVSYTVT LSSGASEPFT FSFGVTGTGT NQADPVSDLA PALTFTNGVV
LNADGSTITV PANVQSFSVT IVTNPDTIDE ENETFNVSIG GVSGTVSIID DDAIVVIDID
GPGAGNARQL NYTENDAASP IAPAMTLADP DSNIVSRATV SITGAFTVGE DVLAFTAVNG
IASNYVAETG VLTFTGTATL AQYQTLLQSV TYFNPSENPT ATPRTVSFVV YDEIDRPSVP
ALATVNVIPV NDAPTNLPVV LAAIAEDSGV RVITQAELLA NAADVDNTTL SVVGLTASSG
TLVDNGNGTW NYTPALNDDT AVSFTYSVSD GSLSVAGSAA MDITPVNDAP VNTPAVLAPI
AEDSVPRVIT QAELLTNASD VDSPALTAEN LVITAGGGTL VDNNDGTWTY TPAPDDDTTV
SFDYTVTDGS LSVPGSVTLD ITPVNDAPVT TPVVLTAIAE DSVPRVITQA ELLANASDID
SNTLTATGLT IAAGAGSLVD NGNGTWTYTP ALNDDSSVSF NYTVSDGALS VPGTATLDIT
PVNDAPVNTP VTLAAIAEDS GARIITQAEL LANATDVDGP ALTAAGLTIT AGNGILVNNN
DGTWTYTPAP NDDGAVSFSY TVSDGSLSVP GSAAMEITPV NDAPVTTPVV LAAIGEDSGA
RIITQAELLA NATDVDSTTL TATGLTVAAG AGSLVDNGNG TWTYTPALND DSAVSFNYSV
SDGALSVPAT ATLDITPVND APTNTPVTLA SIAEDSGPRT ITQVELLANA ADIDGPALTA
SGLAIATGNG TLVNNNDGTW TYTPAPNDDT AVSFNYTVSD GSLSVGGSAS MDITPVDDAP
VNTLPDPTTN LDGVTTNEDT PLFFSVANGN AITVFDADIV NDAGTLTTTI SVAQGTFTLG
STNGVTVSGN GSSSVTVSGT PTAINAALNG ASYRNVADFF THNSNGGFID SAGIGLTVTT
TDSTNLPDTD STSLVVRAVT DVQIVTRVTN EGQATTPFTL ASLVNVNDPG SGFEGAGPAI
TAINGTAVAA GGSVTVLNGV VTLTGDQSLV FTPNAGFTAT AEDPASFTYT VASGGRTETA
AFFVQVDPIA LPVQASPGVA ASSAESIQSI NAASTSPTQS SVDVFNGSVG SDVFAWHLGD
AGTAGSPRAY TVNDFDAAPA SAGGDVLDLR DLLVGENADN LGAFLDFSKS GVDTVISISS
TGSGAADQTI TLTNLDLAAT IGLAPDASEA QMITALINQG KLLVDTAA
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