| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2093 |
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| Symbol | |
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| ID | 6160871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2282860 |
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| End bp | 2284266 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664862 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001791125 |
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| Protein GI | 171058776 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGA AACTGCAGCG CGGGCTCGAA GGCGCCCGCA CCGTGCTGGC CTGCGCCGCG
CGCAAGCTGG TCGGAACCAC CGTGGCCAGC GCCGACAAGG CACAGACCAC GCCCGGCTTC
GAGTTCGAGG CCGCCGAGCT GATGTCGCGC GAGCAGACCG CCCGCGCCCA GCTGATCGTG
CGTGCCGCCG TGCTGGTCAC GCTGGTGCTG CTGGCCTGGG CCGCGATCGC CGAGATCGAC
GAGATCACCC GCGGCGACGG CAAGGTGATC CCGTCGCGCC AGCTGCAGGT GGTGCAGTCG
TACGACGGCG GGGTGGTCAC CGAGATCCTG GTGCGCGAGG GCGATCAGGT CGAAGAGGGC
CAGCTGCTGC TGCGGGTCGA CGAGACCCGC GCCACTTCGG GCGTGCGCGA AAGCGCCGCC
CAGGCCTTTG CGCTGCGCGT GCGACTGGCG CGCCTGAAAG CCCTGGCCGA AGGCGGCGCC
TTCCTGCCGC CGGCGCCGCG GGCCGGCGAC GCGGAGGAGC TGCGCATCGT CGACGAAGAG
CGCAACCTCT ACCAGTCGCG CGCGTCCGAG CTGCAGGCGA TGCTGTCGAT CAACCGCCAG
CAGCTCACGC AGCGCCAGCA GGAATTGAGC GAAGCCCAGG CGCGGCGGTC CTCGGCGCAG
CGCACGCTCG AGCTGTCGCG CCAGGAACTG AACAAGACCC GCCCGCTGCT GGCCTCGGGT
GCGATCTCCG AGGTCGAGGT GCTGAGGCTC GATCGCGACG TCAGCCGCAG CCGCGGCGAG
GTCGAGCAGC TGACCGCGCA GATCGCCCGC GTCCAGGCGT CGATCGGCGA GGCGCAGCGC
AAGACGCAGG AAACCGAGTT GTCTTTTCGC AACGAGGCCC GGCGTGACCT GTCGGACGTG
CTCGGTCGTC TGAATGCCCT CAATCAGGGG GCCGTGGCCC TGGCCGACCG GGTCAGCAAG
GCGCAGGTCA AGTCGCCCGT GCGCGGGCGG GTGCAGCGGC TGCTCGCCAA CACGGTGGGC
GGCGTGGTGC AGCCGGGCAA GGACATCGTC GAGATCGTGC CGCTCGACGA CGCCCTGGTG
CTCGAAGCCA AGGTGCAGCC GAAGGACATC GCCTTCATCC ACCCCGGCCA GGCCGCCACC
GTCAAGTTCA GCGCCTACGA TTTCTCGATC TACGGCGGCC TCGACGCGCT GGTCGAGAAC
ATCAGCCCCG ACACCCAGGT CGACGAACGC GGCAACGCCT TCTACCTGGT GAGGGTGCGC
ACCACGCAGC CGAACTTCGG CGACCAGCAG CCCATCATTC CGGGCATGAC GGCTTCGGTG
GACATCCTGA CGGGCAAGAA GTCGGTGCTG TCCTACCTGC TCAAGCCGAT CCTGAAAGCC
GGGGCCTACG CCTTGCGGGA GCGCTGA
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| Protein sequence | MNEKLQRGLE GARTVLACAA RKLVGTTVAS ADKAQTTPGF EFEAAELMSR EQTARAQLIV
RAAVLVTLVL LAWAAIAEID EITRGDGKVI PSRQLQVVQS YDGGVVTEIL VREGDQVEEG
QLLLRVDETR ATSGVRESAA QAFALRVRLA RLKALAEGGA FLPPAPRAGD AEELRIVDEE
RNLYQSRASE LQAMLSINRQ QLTQRQQELS EAQARRSSAQ RTLELSRQEL NKTRPLLASG
AISEVEVLRL DRDVSRSRGE VEQLTAQIAR VQASIGEAQR KTQETELSFR NEARRDLSDV
LGRLNALNQG AVALADRVSK AQVKSPVRGR VQRLLANTVG GVVQPGKDIV EIVPLDDALV
LEAKVQPKDI AFIHPGQAAT VKFSAYDFSI YGGLDALVEN ISPDTQVDER GNAFYLVRVR
TTQPNFGDQQ PIIPGMTASV DILTGKKSVL SYLLKPILKA GAYALRER
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