| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2092 |
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| Symbol | |
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| ID | 6162067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2280641 |
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| End bp | 2282863 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664861 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001791124 |
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| Protein GI | 171058775 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACA CCGCAGCGTC CGCCCGGATG GGCATTGCCG CACCGCCCGC CAGCACCGCG
ACGCCGAACC CTGCGCCGTC CGATACCGAC CGCCTGCGCG AAGACCTGCT CTACCCCGAC
CCGCTGCTCG ACTGCCTGCT CGAGGTCTGC CGCCTGCACG GCGTGAGCGC GTCGCGCGCC
TCGCTCAGCG CCGGCCTGCC GCTCGACGAC GGTCGCCTGA GCCTGGCGCT GGTCGAGCGT
GCGGCTGGCC GTGCGGGCAT GTACACGCGG TTGCAGCGGG TCAAGGCCAA CCAGATCGAC
ATGTCGACGC TGCCGACGAT CCTGCTGCTG CGCGGCAACG ACGCCTGCGT GCTGCTGGGC
TGGACCAAGG ACGGCGACGC GCGCGTGCTG CTGCCCGAAA CCGGCCAGGG CGCGGTGGTG
ATGCCGCGGC GCGAACTGGT GCGCCGCTAC ACCGGCGTGG CGCTGTTCGT GCGGCCGCAT
TTCCGCTTCG ACGAACGCAC GCCGGGCGTG CGCGAGCAGC GCGTCGGCCA CTGGTTCTGG
AGCGTCGTCA ACAGCCAGCG CGGCGTCTAC CGCGACGTGC TGTGGGCCGC CTTCCTGATC
AACCTGTTCG CGCTGGCGTT CCCGATCTTC ACGATGAACG TCTACGACCG GGTGGTGCCC
AACCATGCGG TCGAGACGCT CTGGGTGCTG TCGACCGGGC TGATCCTGGT GCTCGGCGCC
GACCTCTACA TGCGCCTGCT GCGCAGCCGT TTCGTCGACG AGGCCAGCGC CCGCATCGAC
CTGCAGCTGT CGGCCACGCT GATGGAGCGC GTGCTGGGCA TGCGGCTCGA ACACCGGCCG
GCCTCGGTCG GCTCGTTCGC GGCCAACCTG CGCGGCTACG AGCAGGTGCG CGACTTCATC
GCTGCCTCCA CCGTCACCAC GCTGATCGAC CTGCCGTTCG CGCTGCTGTT CATGCTGACG
ATGCTGTGGA TCTCGCCCTG GCTGCTGCTG CCGGTGGTGA TCGCCTTCGT GCTGATCCTG
CTGACCGGCT GGGTGCTGCA GGGGCGCCTG CACACGCTGT CGCAGTCGAC CTACCAGGCC
AGCGCGCAGC GCAACGCCAC GCTGGTCGAG GCCCTGACCG GCATCGAGAC CATCAAGACC
CAGGCCGCTG AAAGCGTCGT GCAATCGCGC TGGGAGCGCG GCAACCAGTT CCTGGCCAGC
GCGCAGGTCC GCATGCGCGA CATCGCCAAT CGCGCCAGCT ACGGCACCAG CTCGCTGGTG
CAGATCGTGT CGCTCGCGGT GATCGTGATC GGCGTCTACC TGATCAGCGA GCGGTCGCTG
ACGATGGGCG CCTTGATCGC CTGCACCACG CTGGCCGCAC GGGCGCTGGC ACCGGCGGGC
CAGATCGTCG GTCTGCTGAT GCAGTACCAG GGCGCACGCA CCGCGCTGAC CGCGCTCGAC
GCCGTGATGG CCAAGCCGGT CGAACGCGAG GGCGGGCAGA ACTTCCTGCA CCGCCGCGAG
ATGCTCGGCG AGATCGAGCT GCGCAACGTC AGCTTCGCCT ATCCCGGCCG CGATGACGCG
GTGCTCGAAG GTGTCAGCCT GCGCATCGCA CCGGGCGAGC GGGTGGCCTT CATCGGCCGC
GTCGGCTCGG GCAAGACCAC CCTGCAGAAA CTCATGCTCG GGCTCTACCA GCCGACCGAG
GGCGCGGTGC TGATCGACGG CATCGATCTG CGCCAGCTCG ACCCGGCCGA CGTGCGCCGC
AACATGGCCT ACGTGTCGCA GGACGTGACG CTGTTCTACG GCACGCTGCG CGACAACATC
ACGCTCGGCC TGCCGTATGC CGACGACCAG GCGGTGCTCG CCGCTGCCGA CACCGCCTGC
CTGAGCGAGT TCGTCAACCG CCACCCGCGC GGCTTCGACC TGCAGGTGGG CGAGCGCGGC
GACCTGCTGT CGGGCGGCCA GCGCCAGGCG GTCGGCATCG CGCGTGCGGT GCTGCACAAC
GCGCCGGTGC TGCTGCTCGA CGAGCCCACC AGCGCGATGG ACTTCTCGAC CGAAGCGCAG
ATCACCCGCA AGGTGACCGA CTTCGCCGAG GGCAAGACCG TCGTCCTGGT CACGCATCGC
ACCTCGATGC TGGCCCTGGT CCAGCGGGTC GTCGTGATCG ACGGCGGCAA GGTGGTGGCA
GACGGTCCGC GTGACCGCAT CCTGGAGGCC CTGCAATCGG GCCGGATCGC GAGGGCGGCA
TGA
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| Protein sequence | MSDTAASARM GIAAPPASTA TPNPAPSDTD RLREDLLYPD PLLDCLLEVC RLHGVSASRA
SLSAGLPLDD GRLSLALVER AAGRAGMYTR LQRVKANQID MSTLPTILLL RGNDACVLLG
WTKDGDARVL LPETGQGAVV MPRRELVRRY TGVALFVRPH FRFDERTPGV REQRVGHWFW
SVVNSQRGVY RDVLWAAFLI NLFALAFPIF TMNVYDRVVP NHAVETLWVL STGLILVLGA
DLYMRLLRSR FVDEASARID LQLSATLMER VLGMRLEHRP ASVGSFAANL RGYEQVRDFI
AASTVTTLID LPFALLFMLT MLWISPWLLL PVVIAFVLIL LTGWVLQGRL HTLSQSTYQA
SAQRNATLVE ALTGIETIKT QAAESVVQSR WERGNQFLAS AQVRMRDIAN RASYGTSSLV
QIVSLAVIVI GVYLISERSL TMGALIACTT LAARALAPAG QIVGLLMQYQ GARTALTALD
AVMAKPVERE GGQNFLHRRE MLGEIELRNV SFAYPGRDDA VLEGVSLRIA PGERVAFIGR
VGSGKTTLQK LMLGLYQPTE GAVLIDGIDL RQLDPADVRR NMAYVSQDVT LFYGTLRDNI
TLGLPYADDQ AVLAAADTAC LSEFVNRHPR GFDLQVGERG DLLSGGQRQA VGIARAVLHN
APVLLLDEPT SAMDFSTEAQ ITRKVTDFAE GKTVVLVTHR TSMLALVQRV VVIDGGKVVA
DGPRDRILEA LQSGRIARAA
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