Gene Lcho_2082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2082 
Symbol 
ID6162347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2271824 
End bp2272519 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content65% 
IMG OID641664851 
ProductLexA repressor 
Protein accessionYP_001791114 
Protein GI171058765 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.414888 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAAGACA GCCCCAAGCT CACCGCTCGC CAGCAACAGA TCCTCGATCT GATCCAGAGC 
ACCATCGAGC GCACCGGCGC CCCGCCCACC CGTGCCGAGA TCGCCACCGA GTTCGGCTTC
CGATCGGCCA ATGCGGCCGA GGAACACCTC CAAGCCCTTG CGCGCAAGGG TGTGATCGAG
CTGCTGGGCG GCACCTCGCG CGGCATCCGG CTGAAGTCTG ACACATTGCG ATCCATCAAC
GAATCGCGCC TGCGCGGCAT CGGCCAGCAG TTCAGCCTGC CGCTGTCGAA CATGCCGCCG
GCCCAGCTCA CGTTGCCCCT GGTCGGTCGG GTTGCTGCCG GCAGCCCCAT CCTGGCGCAG
CAGCACATCG ATCAGAGCTA CACGTTCGAG GCCCACATGT TCTCGCGCAA GCCCGATTTC
CTGCTCAAGG TGCGTGGCAT GAGCATGCGC GATGCGGGCA TCCTCGATGG TGACCTGATC
GCCGTGCAGC GCGCCAGCGA AGCCAAGAAC GGCCAGATCG TGGTGGCACG CCTGGGCGAC
GAGGTCACCG TCAAGCGCTG GCGCCGCAGC AAGAGCGGCA TCGACCTGAT CCCCGAGAAC
CCCGATTTCG ACATCATCCA TGTGCCTGCG GACAGCCCCG ACTTCGCGCT AGAAGGCTTG
GCCGTGGGTC TGATCCGCAA CACGATGCTG ATGTGA
 
Protein sequence
MQDSPKLTAR QQQILDLIQS TIERTGAPPT RAEIATEFGF RSANAAEEHL QALARKGVIE 
LLGGTSRGIR LKSDTLRSIN ESRLRGIGQQ FSLPLSNMPP AQLTLPLVGR VAAGSPILAQ
QHIDQSYTFE AHMFSRKPDF LLKVRGMSMR DAGILDGDLI AVQRASEAKN GQIVVARLGD
EVTVKRWRRS KSGIDLIPEN PDFDIIHVPA DSPDFALEGL AVGLIRNTML M