| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2082 |
|---|
| Symbol | |
|---|
| ID | 6162347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2271824 |
|---|
| End bp | 2272519 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641664851 |
|---|
| Product | LexA repressor |
|---|
| Protein accession | YP_001791114 |
|---|
| Protein GI | 171058765 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.414888 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGACA GCCCCAAGCT CACCGCTCGC CAGCAACAGA TCCTCGATCT GATCCAGAGC
ACCATCGAGC GCACCGGCGC CCCGCCCACC CGTGCCGAGA TCGCCACCGA GTTCGGCTTC
CGATCGGCCA ATGCGGCCGA GGAACACCTC CAAGCCCTTG CGCGCAAGGG TGTGATCGAG
CTGCTGGGCG GCACCTCGCG CGGCATCCGG CTGAAGTCTG ACACATTGCG ATCCATCAAC
GAATCGCGCC TGCGCGGCAT CGGCCAGCAG TTCAGCCTGC CGCTGTCGAA CATGCCGCCG
GCCCAGCTCA CGTTGCCCCT GGTCGGTCGG GTTGCTGCCG GCAGCCCCAT CCTGGCGCAG
CAGCACATCG ATCAGAGCTA CACGTTCGAG GCCCACATGT TCTCGCGCAA GCCCGATTTC
CTGCTCAAGG TGCGTGGCAT GAGCATGCGC GATGCGGGCA TCCTCGATGG TGACCTGATC
GCCGTGCAGC GCGCCAGCGA AGCCAAGAAC GGCCAGATCG TGGTGGCACG CCTGGGCGAC
GAGGTCACCG TCAAGCGCTG GCGCCGCAGC AAGAGCGGCA TCGACCTGAT CCCCGAGAAC
CCCGATTTCG ACATCATCCA TGTGCCTGCG GACAGCCCCG ACTTCGCGCT AGAAGGCTTG
GCCGTGGGTC TGATCCGCAA CACGATGCTG ATGTGA
|
|---|
| Protein sequence | MQDSPKLTAR QQQILDLIQS TIERTGAPPT RAEIATEFGF RSANAAEEHL QALARKGVIE
LLGGTSRGIR LKSDTLRSIN ESRLRGIGQQ FSLPLSNMPP AQLTLPLVGR VAAGSPILAQ
QHIDQSYTFE AHMFSRKPDF LLKVRGMSMR DAGILDGDLI AVQRASEAKN GQIVVARLGD
EVTVKRWRRS KSGIDLIPEN PDFDIIHVPA DSPDFALEGL AVGLIRNTML M
|
|---|
| |