Gene Lcho_2078 details

Gene Information

• Locus tag: Lcho_2078
• ID: 6162456
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2266744
• End bp: 2268708
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641664847
• Product: ABC transporter-related protein
• Protein accession: YP_001791110
• Protein GI: 171058761
• COG category: [R] General function prediction only
• COG ID: [COG0488] ATPase components of ABC transporters with duplicated ATPase domains

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.053662
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTCCAGC TCAAGAACAT CACCCTGCGT CGCGGCACCA AGCTCGTGCT CGAACAAACC 
GGCTTCACCC TGCAGCCTGG CGAAAAGGCC AGCCTGGTGG GCCGCAACGG CGCGGGCAAG 
TCCAGTCTTT TCGCGCTGCT GACCCACCGT CTGCAGTCCG ACGGCGGCGA GGTCGAGATG 
CCGCCGCGCT GGCGCATCGC CGAGGTCGAG CAGAACATGC CCGAGACCGA ACAGGGCGCC 
ACCGACTTCG TGCTCGAAGG CGACCGGCCG CTGATGGCCG CGCGTGCCGC GCTCGCTGCC 
GCCGAAGCGG CCGACGATGG CCACGCCATC GGCGACGCCT ACCTGGCGCT GGGCGAGGCC 
GGCGAGTTCG ACGCGGTGGC CCGCGCGCAG ACGCTGCTGC TGGGCCTGGG CTTCTCGATG 
GCGCAGGTCG ACTCGCCCGT CAACAGCTTC TCGGGCGGCT GGCGGATGCG GCTGCAGCTG 
GCGCGTGCGC TGATGTTCCC GGGCGAACTG CTGCTGCTCG ACGAACCCAC CAACCACCTG 
GACCTCGACG CGCTGGTCTG GCTCGAAGCC TGGCTGCAGC GCTTCGAGGG CACGATGCTG 
GTGATCAGCC ACGACCGCGA ATTCCTCGAC GCCGTCACCA AGGTCACGCT GCACCTCGAG 
GAGACCAAGC TGACGCGCTA CGGCAGCAAC TACTCGGGCT TCGAACTGAT GCGCGCCGAG 
CGCATGGAGC AGCAGCAGGC CGCGTTCGGC AAGCAGCAGG AGAAGGTGGC ACACCTGCAG 
CGCTTCATCG ACCGCTTCAA GGCCAAGGCC AGCAAGGCCA AGCAGGCGCA GAGCCGCGTC 
AAGGCGCTGG CACGGATGGA GAAGATCGCG CCGGTGCTGA CGAGCGCCGA CTTCCAGTTC 
GAGTTCCGCG AGCCGCAGAG CCTGCCAAAC CCGATGCTGG TGATGAGCGA TCTGGAGGTC 
GGCTATCCGG GCGAGGACGG TGCGCCCGAC ACGGTCATCG TGCGCAACAT CAACAAGAGC 
GTGCTGCCGG GTGAGCGCAT CGGCATCCTG GGCGCCAACG GCCAGGGCAA GTCGACGCTG 
GTCAAGACGG TGTCGCGCAT GCAGAAGGCG CTGGGCGGCC ACATCCAGGA GGGCAAGGGC 
CTGGCGATCG GCTATTTCGC GCAGCAGGAG ATGGACGTGC TGCGCCCCGA CGAAGGCCCG 
CTGGCGCACA TGATCCGCCT GGCCCGCGAT CAGGGCCCGC CAGGGCGCGA ACAGGAACTG 
CGCGACTTCC TCGGCCGCTT CCGCTTCACC GGCGAGATGG TCGGACAGGC GGTCGGCAGT 
CTGTCGGGCG GCGAGAAGGC GCGGCTGGTG CTGGCCATGC TGGTCTGGCA GCGCCCCAAC 
CTGCTGCTGC TCGACGAGCC GACCAACCAC CTCGACCTGA CCACCCGCGA GGCGCTGAGC 
ATGGCGCTCA ACGAATACGA AGGCACGGTG ATGCTGGTCA GCCACGACCG CGCCCTGCTG 
CGCGAGGTGT GCGACGAGTT CTGGCTGGTC ACCAAGGGCC GCGTCGAGCC CTTCGACGGC 
GATCTGGACG ACTACCAGAA GTGGCTGCTC GAGCAGAGCC GAGAAGCCGC GCGGGCCGCC 
AAGGCCTCGC AGCAAAGCCC AGCGGCCGCA CCGGTCAATA CCGTCGCCGC CGCGCCCAGC 
GCGCCGGTCG ATGCCGGCGA TCGCAAGGCC AGCGCAGCCA TCCGCCAGAA ACGAGCCGAA 
CTGGCCAAGC CCCTGAAGAA GGAGCAGGCG CAGGTCGAAC AACGGCTGGC CGCGGCCCAG 
GCCCAGCACG CCACGCTGCT GGCCGCGATG GCCGACGCCG CCTTGCCAGC CGCCCGGCGC 
GCCGAACAAG GCCGTCAACT CAAGGAACTG GCCGACAGCA TCGAGACGCT CGAGCACCGC 
TGGCTGGAGA TCGGCGAAGC ACTCGAAGAC ATGTCGCGCG ACTGA 

 

Protein sequence

MLQLKNITLR RGTKLVLEQT GFTLQPGEKA SLVGRNGAGK SSLFALLTHR LQSDGGEVEM 
PPRWRIAEVE QNMPETEQGA TDFVLEGDRP LMAARAALAA AEAADDGHAI GDAYLALGEA 
GEFDAVARAQ TLLLGLGFSM AQVDSPVNSF SGGWRMRLQL ARALMFPGEL LLLDEPTNHL 
DLDALVWLEA WLQRFEGTML VISHDREFLD AVTKVTLHLE ETKLTRYGSN YSGFELMRAE 
RMEQQQAAFG KQQEKVAHLQ RFIDRFKAKA SKAKQAQSRV KALARMEKIA PVLTSADFQF 
EFREPQSLPN PMLVMSDLEV GYPGEDGAPD TVIVRNINKS VLPGERIGIL GANGQGKSTL 
VKTVSRMQKA LGGHIQEGKG LAIGYFAQQE MDVLRPDEGP LAHMIRLARD QGPPGREQEL 
RDFLGRFRFT GEMVGQAVGS LSGGEKARLV LAMLVWQRPN LLLLDEPTNH LDLTTREALS 
MALNEYEGTV MLVSHDRALL REVCDEFWLV TKGRVEPFDG DLDDYQKWLL EQSREAARAA 
KASQQSPAAA PVNTVAAAPS APVDAGDRKA SAAIRQKRAE LAKPLKKEQA QVEQRLAAAQ 
AQHATLLAAM ADAALPAARR AEQGRQLKEL ADSIETLEHR WLEIGEALED MSRD